Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq243 677 0.0 seq260 522 3e-143 >seq243 Length=18593 Score = 677 bits (750), Expect = 0.0 Identities = 739/979 (75%), Gaps = 2/979 (0%) Strand=Plus/Minus Query 159959 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 160018 ||| || ||||||||||| || | |||||| | ||||| |||||||| || || || Sbjct 3847 TTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCT 3788 Query 160019 GATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTC-ATCGTCGCCTTCGTCGCTGCTC 160077 ||||| || || | || ||||||| | |||||| || |||| || ||||||||| Sbjct 3787 TATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTC 3729 Query 160078 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 160137 | || || || || || || || || ||||| || | |||||| | | ||||| || | Sbjct 3728 CGCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATA 3669 Query 160138 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 160197 |||| || ||||| || || || ||| |||| |||||||||||| | || || || || | Sbjct 3668 ACATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAA 3609 Query 160198 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 160257 |||||||||| || || ||||| || ||| | ||||| ||||| |||| |||||| | | Sbjct 3608 TCTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCG 3549 Query 160258 TATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACC 160317 ||| |||||| | | || || | | |||| ||||| ||||| |||||| | || | || Sbjct 3548 TATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCC 3489 Query 160318 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 160377 ||||||||||||| || |||||| || || ||||| || || || |||||||| ||| Sbjct 3488 GTTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTG 3429 Query 160378 CTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 160437 |||||||| | | ||||| | || |||||||| ||||| |||| |||||| | |||| Sbjct 3428 CTGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTA 3369 Query 160438 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATC 160497 | ||||||||||| || | ||| | ||||||||||||||||| || || | ||||| | Sbjct 3368 TTTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACC 3309 Query 160498 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACG 160557 | ||||| ||||| || |||||||| ||||| ||||| || || || ||||| ||||| | Sbjct 3308 CATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATG 3249 Query 160558 GAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACG 160617 | | || ||||| || | |||||||||| ||||||| || || ||| | Sbjct 3248 GTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTG 3189 Query 160618 GTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCG 160677 |||| || ||||| ||| | ||||| || ||||||||||| || || ||||| || |||| Sbjct 3188 GTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCG 3129 Query 160678 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGG 160737 ||||||| || |||||||| ||||| || || ||||| ||||| | ||||||||| | | Sbjct 3128 GTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAG 3069 Query 160738 CAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 160797 | || ||||| || || || || ||||| |||||| | ||| || || |||||||| | Sbjct 3068 CTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTA 3009 Query 160798 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACA 160857 || | || ||||||||||| ||||| || | | ||| ||||||||||| | |||| Sbjct 3008 ACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACA 2949 Query 160858 CCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 160917 | ||||| || | | || |||||| |||||||||||||||||||||||| ||||| | Sbjct 2948 CTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATG 2889 Query 160918 CACACAACTTCCCACTCGA 160936 ||||||| |||||||| || Sbjct 2888 CACACAATTTCCCACTAGA 2870 >seq260 Length=66046 Score = 522 bits (578), Expect = 3e-143 Identities = 733/1026 (71%), Gaps = 2/1026 (0%) Strand=Plus/Minus Query 161682 GGGTGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGG 161741 || |||||||| || | || ||||||||| || |||||||| || ||| |||||||| Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598 Query 161742 TCTGGACTTCTTCTTCTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCAC 161800 || || || || || ||||| ||||| ||| | || | || |||||| | ||||| || Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539 Query 161801 AACTTTCGCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAA 161860 ||| || | || |||||||| ||||| | |||| ||| ||| | |||||| || Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479 Query 161861 CTTTCTTACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCT 161920 |||| | || | | ||| || || ||| | |||||| |||||| | | || | Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTTT 57419 Query 161921 CTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAA 161980 |||||||| || |||||||| ||||| || ||| ||||||||| || || |||| Sbjct 57418 ATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGAC 57359 Query 161981 TTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACT 162040 ||||| ||||| || ||||| || | |||||||||| ||||| ||||| || ||| | Sbjct 57358 ATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAAT 57299 Query 162041 GGCACGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGT 162100 |||||| || || || || || || || ||||| || |||| |||||||| || Sbjct 57298 CGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGT 57239 Query 162101 TTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTC 162160 |||||| || || | || |||||||| ||||| || ||||||||||| || ||| Sbjct 57238 TTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAG 57179 Query 162161 CTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGAC 162220 ||||| || ||||| || || | || | || || | ||||| ||||| |||||||| Sbjct 57178 TTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGAC 57119 Query 162221 CCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGC 162280 |||| || || ||||||||||| ||||||||| | ||||| | || ||||| | ||| Sbjct 57118 TTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGC 57059 Query 162281 TATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTT 162340 ||||| || | ||||| |||||||| ||| || ||||| || |||||||| || Sbjct 57058 AATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACATT 56999 Query 162341 TAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTT 162400 | |||||| || | || || | ||||| ||||||||| | || || ||||| ||||| Sbjct 56998 TCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCTT 56939 Query 162401 CTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 162460 ||||| || || |||||| | ||||||||||| || || ||| | ||||| || ||||| Sbjct 56938 TTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGTT 56879 Query 162461 GTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAA 162520 ||||| || || | ||| ||||||| || |||| | | || | || | || Sbjct 56878 ATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAAA 56819 Query 162521 CCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGA 162580 | ||||| | ||||||||| || || || | || || ||||| || || ||||| Sbjct 56818 TTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTGA 56759 Query 162581 AACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGC 162640 ||| || || || || || ||||| | |||||||| | ||||| ||| | || || Sbjct 56758 AACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTCA 56699 Query 162641 CGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCT 162700 || || || ||||| || || | |||||||| || ||| | || | || ||||| || Sbjct 56698 AGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCT 56639 Query 162701 TTAATA 162706 |||||| Sbjct 56638 TTAATA 56633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559501384318800