Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_026926.1
Length=192108
Score E
Sequences producing significant alignments: (Bits) Value
seq243 654 0.0
seq260 488 7e-133
>seq243
Length=18593
Score = 654 bits (724), Expect = 0.0
Identities = 743/994 (75%), Gaps = 2/994 (0%)
Strand=Plus/Minus
Query 180980 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 181039
||| || ||||||||||| || | |||||| | ||||| |||||||| || || ||
Sbjct 3847 TTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCT 3788
Query 181040 GATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTC-ATCGTCGCCTTCGTCGCTGCTC 181098
||||| || || | || ||||||||| |||||| || |||| || |||||||||
Sbjct 3787 TATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTC 3729
Query 181099 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 181158
| || || || || || || || || ||||| || | |||||| | | ||||| || |
Sbjct 3728 CGCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATA 3669
Query 181159 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 181218
|||| || ||||| || || || ||| |||| |||||||||||| | || || || || |
Sbjct 3668 ACATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAA 3609
Query 181219 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 181278
|||||||||| || || ||||| || ||| | ||||| ||||| |||| |||||| | |
Sbjct 3608 TCTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCG 3549
Query 181279 TCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACC 181338
| | |||||| | | || |||| | |||||||||| |||||||||||| | |||| ||
Sbjct 3548 TATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCC 3489
Query 181339 GCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTG 181398
| ||||||||||| || |||||| ||||| || || || || || || ||||| |||
Sbjct 3488 GTTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTG 3429
Query 181399 CTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCA 181458
|||||||| | | ||||| | || |||||||| |||||||| | |||||| | || |
Sbjct 3428 CTGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTA 3369
Query 181459 TCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATC 181518
| |||||||| ||||| | ||| | || ||||||||||| || |||||| | ||||| |
Sbjct 3368 TTTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACC 3309
Query 181519 CCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACG 181578
| ||||| ||| | ||||| || |||||||||||||||||| | || ||||||||| |
Sbjct 3308 CATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATG 3249
Query 181579 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 181638
|||| || || || ||||| | | ||||| || ||||||| || || ||| ||
Sbjct 3248 GTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTG 3189
Query 181639 GTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTG 181698
||||||| ||||||||| ||||||| || ||||||||||| || || || || || || |
Sbjct 3188 GTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCG 3129
Query 181699 GTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCG 181758
|||| || || |||||||| || || || || ||||| ||||| | ||||||||| | |
Sbjct 3128 GTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAG 3069
Query 181759 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTA 181818
| || ||||| || ||||| || ||||| || || | || | || ||||||||||
Sbjct 3068 CTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTA 3009
Query 181819 ACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACA 181878
|| | ||||| |||||||| ||||| || | | || |||||| ||||| | ||||
Sbjct 3008 ACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACA 2949
Query 181879 CCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACG 181938
| ||||| || | | |||||||| ||| || |||||||| ||||| || || || |
Sbjct 2948 CTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATG 2889
Query 181939 CGCACAACTTCCCGCTTGATCTTGCAGCAGCTGA 181972
| ||||| ||||| || ||| | |||| || |||
Sbjct 2888 CACACAATTTCCCACTAGATTTAGCAGTAGTTGA 2855
>seq260
Length=66046
Score = 488 bits (540), Expect = 7e-133
Identities = 726/1022 (71%), Gaps = 6/1022 (1%)
Strand=Plus/Minus
Query 182355 GGGTGGTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGG 182414
|| ||||| ||| || | || |||||| || || ||||| ||||| ||| | || |||
Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598
Query 182415 TCTGGACTCCTACTTCTTCCC-ACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGAC 182473
|| || || || || ||||| ||||| ||| | || | || |||||| | ||||| ||
Sbjct 57597 TCAGGTCTATTA-TTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539
Query 182474 AGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAA 182533
| | ||||| | |||||| || || || | ||| |||| ||| | || ||| ||
Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479
Query 182534 CTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACT 182593
|||| | || | ||||| || || || ||| || |||||| |||||| || || | |
Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTT 57420
Query 182594 T-TGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGA 182652
| |||||||| || |||| || |||| || |||||||||||||| || || ||||
Sbjct 57419 TATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGA 57360
Query 182653 ATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAAC 182712
|| || || || |||||||| || || | ||||| || |||||| | ||||| |||
Sbjct 57359 CATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAA 57300
Query 182713 TTGCTCGCCTGATTGGAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTG 182772
| || || || ||| | || || || || ||||| ||||||| |||||||| |
Sbjct 57299 TCGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAG 57240
Query 182773 TATTCGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGT 182832
| || || ||| || | || || || || || || || ||||||||| || |||
Sbjct 57239 TTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGA 57180
Query 182833 CCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGA 182892
|||||||| || || || ||| | || | || ||| | || ||||||||||||||||
Sbjct 57179 GTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGA 57120
Query 182893 CACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTG 182952
| | || || || ||||||||||| ||||||||| | || || | || || || |||
Sbjct 57119 CTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTG 57060
Query 182953 CTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACAT 183012
| || ||||| | |||||||| ||||| | | ||||||||| || ||||||||||
Sbjct 57059 CAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACAT 57000
Query 183013 TTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTT 183072
|| ||||| || | ||||| | || || || ||||| | || ||||| ||||| |
Sbjct 56999 TTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCT 56940
Query 183073 TTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGT 183132
||||||||||||| ||||| || |||||| ||||| |||||||| || ||||||||||
Sbjct 56939 TTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 56880
Query 183133 TGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTT-GCTCTT 183191
| ||||| || || | ||| | ||| | || |||| | | | ||||| || |
Sbjct 56879 TATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGT-AGTAGGCTTAGCATTA 56821
Query 183192 AATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTC 183251
||| | ||||| | ||||| || ||||| ||| | || || ||||| || || ||
Sbjct 56820 AATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTT 56761
Query 183252 GAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCT 183311
|| || || || ||||| || || ||| | |||||||| | ||||||||| |||| ||
Sbjct 56760 GAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCT 56701
Query 183312 GCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCA 183371
||||| || |||||||| || | ||||| || || ||| |||| | || |||||
Sbjct 56700 CAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCT 56641
Query 183372 CT 183373
||
Sbjct 56640 CT 56639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 614614726662720
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