Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_026927.1
Length=228143
Score E
Sequences producing significant alignments: (Bits) Value
seq243 737 0.0
seq260 531 7e-146
>seq243
Length=18593
Score = 737 bits (816), Expect = 0.0
Identities = 764/1001 (76%), Gaps = 0/1001 (0%)
Strand=Plus/Minus
Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518
|||| || |||||| ||||| ||| || | || || | || || ||||||||
Sbjct 3855 TGGGCTCGTTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTT 3796
Query 174519 GGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGTTTCATTATCGCTTTCGTG 174578
|||||||| ||||| |||||||| ||| | |||||| ||| ||||||||||| |
Sbjct 3795 GGTGTTCTTATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATC 3736
Query 174579 GGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTAT 174638
| |||||| ||||| || || || || || || ||||||||| | |||||| | | |||
Sbjct 3735 GCTGCTCCGCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATAT 3676
Query 174639 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTC 174698
||||| ||||| || ||||| || || || || | |||||||||||| ||| |||| ||
Sbjct 3675 GGAAATAACATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTT 3616
Query 174699 TACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAA 174758
||||||||||||||||| || | || ||||||||| | || || ||||| |||| ||||
Sbjct 3615 TACCCAATCTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAA 3556
Query 174759 CTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAACTC 174818
|| | || | ||||| | | || || | | || ||||| ||||| |||||| |
Sbjct 3555 CTTATCGTATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTA 3496
Query 174819 TCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGCA 174878
|||| |||||||||||| | || |||||| || || || || ||||| ||||| |||
Sbjct 3495 TCTTTCCGTTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCA 3436
Query 174879 GCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCCC 174938
||| | || |||||| | | ||||| | || |||||||||||||| || | |||||
Sbjct 3435 GCTACTGCTGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCA 3376
Query 174939 TTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTTG 174998
|| ||||| ||||| || ||||| | ||| | || |||||||||||||||||||| ||
Sbjct 3375 TTAGGTATTTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTA 3316
Query 174999 ATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCG 175058
|||||||| ||||| ||| | || || || ||||| || ||||||||||| || || ||
Sbjct 3315 ATGCACCCATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCA 3256
Query 175059 ATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCACAG 175118
|||||||||||| | || || ||||| | | ||||| |||||||||| || ||
Sbjct 3255 ATGCATGGTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCT 3196
Query 175119 AACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGC 175178
||| ||||||||| ||||| ||| ||||||| || || |||||||| || || |||||
Sbjct 3195 AACGTTGGTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGA 3136
Query 175179 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTC 175238
|| ||||||||||| || ||||||||||| || || || ||||| || || | ||||||
Sbjct 3135 TATTTCGGTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTC 3076
Query 175239 TTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATG 175298
|||||||| || ||||||||||| ||||| ||||| || || | ||| |||| || |||
Sbjct 3075 TTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATG 3016
Query 175299 GCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTA 175358
||||| ||| | |||||||||||||| ||||| || || | || ||||||| | ||
Sbjct 3015 GCATTTAACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTT 2956
Query 175359 TTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAG 175418
| ||||| ||||| ||| || ||||| | ||| |||||| |||||||| ||||||||
Sbjct 2955 ATTAACACTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAA 2896
Query 175419 AGAAATGCACACAACTTCCCACTAGATTTGGCAGCAGCTGA 175459
| ||||||||||| |||||||||||||| |||| || |||
Sbjct 2895 CGTAATGCACACAATTTCCCACTAGATTTAGCAGTAGTTGA 2855
>seq260
Length=66046
Score = 531 bits (588), Expect = 7e-146
Identities = 744/1024 (73%), Gaps = 16/1024 (2%)
Strand=Plus/Minus
Query 175845 GGGTGGTATGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGG 175904
|| |||| |||||| | || |||||||||| | ||| | ||| | ||||||||||||
Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598
Query 175905 TCTGGATTACTACTTCTTCCC-ACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCAC 175963
|| || || || || ||||| ||||| ||| | || | || || ||| | ||||| ||
Sbjct 57597 TCAGGTCTATTA-TTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539
Query 175964 AACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAA 176023
||| ||||| | |||||| || ||||| | ||| |||| ||| | |||||| ||
Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479
Query 176024 CTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACT 176083
|||| | || | ||||| || || || ||| || |||||| |||||| || || | |
Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTT 57420
Query 176084 T-TGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGT 176142
| |||||||| ||| |||| || || || || ||| |||||||||||| ||||||
Sbjct 57419 TATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGA 57360
Query 176143 CCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAAC 176202
| |||||||| || |||||||| || || | |||||||| ||||||||||| || |||
Sbjct 57359 CATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAA 57300
Query 176203 TGGCAAGACTCA-TTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCT 176261
| ||| | ||| || || || || || ||||| |||||||| || ||||| ||
Sbjct 57299 TCGCACGT-TCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCA 57241
Query 176262 GTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCC 176321
|| ||||| ||| ||| | | |||||| ||||||||||| ||||| ||||| ||
Sbjct 57240 GTTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCG 57181
Query 176322 TCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGT-TTCTTC-AGGGTTTCCACAACT 176379
|||||||| ||||| || || | || |||| | |||||| | |||||||||||||
Sbjct 57180 AGTTTTGGTGTTGCAGCTATTTTCCGTTT--TATTTTATTCTTCCAAGGTTTCCACAACT 57123
Query 176380 GGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTAT 176439
|||| |||| || || ||||||||||| ||||||||| | ||||| | || || || |
Sbjct 57122 GGACTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTT 57063
Query 176440 CTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAA-C 176498
|||||| ||||||| || || |||||||| |||| ||||||||| || | | ||| |
Sbjct 57062 GTGCAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGA-CGGTGCAAAC 57004
Query 176499 ACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAAC 176558
|| || |||||| || | || || | ||||| || ||||| | || || || ||
Sbjct 57003 ACATTTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAAT 56944
Query 176559 CGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTT 176618
||||| ||||| ||||| ||||| || |||||| |||||| |||||| | || ||||||
Sbjct 56943 CGCTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTT 56884
Query 176619 ATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAG-TATTGGCATCATTGGGCTT-G 176676
||||| ||||| || || | ||| || || || | | |||| | | | ||||| |
Sbjct 56883 ATGTTATTTGTACCAGTAACTGGT-TTATGGACTAGTGCTTTTGGTGT-AGTAGGCTTAG 56826
Query 176677 CTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTG 176736
| | ||| | ||||| | ||||| || ||||| ||| | || || ||||| || |
Sbjct 56825 CATTAAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAG 56766
Query 176737 AGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGG 176796
| ||||||||||| || ||||| || || ||| | || ||||| | | || |||||||
Sbjct 56765 AATTTGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGG 56706
Query 176797 CACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTA 176856
| || ||||| || ||||| ||| ||||||||||| || ||| |||| | || |
Sbjct 56705 CTGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAA 56646
Query 176857 ACGC 176860
||||
Sbjct 56645 ACGC 56642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729926187579120
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