Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq243 737 0.0 seq260 531 7e-146 >seq243 Length=18593 Score = 737 bits (816), Expect = 0.0 Identities = 764/1001 (76%), Gaps = 0/1001 (0%) Strand=Plus/Minus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518 |||| || |||||| ||||| ||| || | || || | || || |||||||| Sbjct 3855 TGGGCTCGTTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTT 3796 Query 174519 GGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGTTTCATTATCGCTTTCGTG 174578 |||||||| ||||| |||||||| ||| | |||||| ||| ||||||||||| | Sbjct 3795 GGTGTTCTTATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATC 3736 Query 174579 GGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTAT 174638 | |||||| ||||| || || || || || || ||||||||| | |||||| | | ||| Sbjct 3735 GCTGCTCCGCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATAT 3676 Query 174639 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTC 174698 ||||| ||||| || ||||| || || || || | |||||||||||| ||| |||| || Sbjct 3675 GGAAATAACATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTT 3616 Query 174699 TACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAA 174758 ||||||||||||||||| || | || ||||||||| | || || ||||| |||| |||| Sbjct 3615 TACCCAATCTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAA 3556 Query 174759 CTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAACTC 174818 || | || | ||||| | | || || | | || ||||| ||||| |||||| | Sbjct 3555 CTTATCGTATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTA 3496 Query 174819 TCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGCA 174878 |||| |||||||||||| | || |||||| || || || || ||||| ||||| ||| Sbjct 3495 TCTTTCCGTTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCA 3436 Query 174879 GCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCCC 174938 ||| | || |||||| | | ||||| | || |||||||||||||| || | ||||| Sbjct 3435 GCTACTGCTGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCA 3376 Query 174939 TTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTTG 174998 || ||||| ||||| || ||||| | ||| | || |||||||||||||||||||| || Sbjct 3375 TTAGGTATTTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTA 3316 Query 174999 ATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCG 175058 |||||||| ||||| ||| | || || || ||||| || ||||||||||| || || || Sbjct 3315 ATGCACCCATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCA 3256 Query 175059 ATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCACAG 175118 |||||||||||| | || || ||||| | | ||||| |||||||||| || || Sbjct 3255 ATGCATGGTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCT 3196 Query 175119 AACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGC 175178 ||| ||||||||| ||||| ||| ||||||| || || |||||||| || || ||||| Sbjct 3195 AACGTTGGTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGA 3136 Query 175179 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTC 175238 || ||||||||||| || ||||||||||| || || || ||||| || || | |||||| Sbjct 3135 TATTTCGGTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTC 3076 Query 175239 TTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATG 175298 |||||||| || ||||||||||| ||||| ||||| || || | ||| |||| || ||| Sbjct 3075 TTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATG 3016 Query 175299 GCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTA 175358 ||||| ||| | |||||||||||||| ||||| || || | || ||||||| | || Sbjct 3015 GCATTTAACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTT 2956 Query 175359 TTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAG 175418 | ||||| ||||| ||| || ||||| | ||| |||||| |||||||| |||||||| Sbjct 2955 ATTAACACTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAA 2896 Query 175419 AGAAATGCACACAACTTCCCACTAGATTTGGCAGCAGCTGA 175459 | ||||||||||| |||||||||||||| |||| || ||| Sbjct 2895 CGTAATGCACACAATTTCCCACTAGATTTAGCAGTAGTTGA 2855 >seq260 Length=66046 Score = 531 bits (588), Expect = 7e-146 Identities = 744/1024 (73%), Gaps = 16/1024 (2%) Strand=Plus/Minus Query 175845 GGGTGGTATGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGG 175904 || |||| |||||| | || |||||||||| | ||| | ||| | |||||||||||| Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598 Query 175905 TCTGGATTACTACTTCTTCCC-ACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCAC 175963 || || || || || ||||| ||||| ||| | || | || || ||| | ||||| || Sbjct 57597 TCAGGTCTATTA-TTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539 Query 175964 AACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAA 176023 ||| ||||| | |||||| || ||||| | ||| |||| ||| | |||||| || Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479 Query 176024 CTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACT 176083 |||| | || | ||||| || || || ||| || |||||| |||||| || || | | Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTT 57420 Query 176084 T-TGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGT 176142 | |||||||| ||| |||| || || || || ||| |||||||||||| |||||| Sbjct 57419 TATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGA 57360 Query 176143 CCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAAC 176202 | |||||||| || |||||||| || || | |||||||| ||||||||||| || ||| Sbjct 57359 CATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAA 57300 Query 176203 TGGCAAGACTCA-TTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCT 176261 | ||| | ||| || || || || || ||||| |||||||| || ||||| || Sbjct 57299 TCGCACGT-TCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCA 57241 Query 176262 GTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCC 176321 || ||||| ||| ||| | | |||||| ||||||||||| ||||| ||||| || Sbjct 57240 GTTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCG 57181 Query 176322 TCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGT-TTCTTC-AGGGTTTCCACAACT 176379 |||||||| ||||| || || | || |||| | |||||| | ||||||||||||| Sbjct 57180 AGTTTTGGTGTTGCAGCTATTTTCCGTTT--TATTTTATTCTTCCAAGGTTTCCACAACT 57123 Query 176380 GGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTAT 176439 |||| |||| || || ||||||||||| ||||||||| | ||||| | || || || | Sbjct 57122 GGACTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTT 57063 Query 176440 CTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAA-C 176498 |||||| ||||||| || || |||||||| |||| ||||||||| || | | ||| | Sbjct 57062 GTGCAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGA-CGGTGCAAAC 57004 Query 176499 ACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAAC 176558 || || |||||| || | || || | ||||| || ||||| | || || || || Sbjct 57003 ACATTTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAAT 56944 Query 176559 CGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTT 176618 ||||| ||||| ||||| ||||| || |||||| |||||| |||||| | || |||||| Sbjct 56943 CGCTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTT 56884 Query 176619 ATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAG-TATTGGCATCATTGGGCTT-G 176676 ||||| ||||| || || | ||| || || || | | |||| | | | ||||| | Sbjct 56883 ATGTTATTTGTACCAGTAACTGGT-TTATGGACTAGTGCTTTTGGTGT-AGTAGGCTTAG 56826 Query 176677 CTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTG 176736 | | ||| | ||||| | ||||| || ||||| ||| | || || ||||| || | Sbjct 56825 CATTAAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAG 56766 Query 176737 AGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGG 176796 | ||||||||||| || ||||| || || ||| | || ||||| | | || ||||||| Sbjct 56765 AATTTGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGG 56706 Query 176797 CACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTA 176856 | || ||||| || ||||| ||| ||||||||||| || ||| |||| | || | Sbjct 56705 CTGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAA 56646 Query 176857 ACGC 176860 |||| Sbjct 56645 ACGC 56642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729926187579120