Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_027132.1
Length=190768
Score E
Sequences producing significant alignments: (Bits) Value
seq243 724 0.0
seq260 508 7e-139
>seq243
Length=18593
Score = 724 bits (802), Expect = 0.0
Identities = 749/978 (77%), Gaps = 2/978 (0%)
Strand=Plus/Minus
Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920
|| || ||||||||||| ||| | || || || |||||||||||||| ||||| ||
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTC-ATCGTTGCTTTCGTAGCAGCACC 178979
||||| ||||| || | | ||||||| |||||| || | ||||| | || || ||
Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728
Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039
|| || |||||||| || || || ||||| || | |||||| | | |||||||| ||
Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668
Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099
||| || ||||| ||||| || |||| |||||||||||||||| |||| || ||||| ||
Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608
Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159
||||||||| || || || || || ||| | ||||| ||||| |||| |||||| | ||
Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548
Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219
| ||||| | | || || | | | || ||||| ||||| |||||| | |||| |||
Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488
Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279
| ||||||||||||| |||||| ||||| || || ||||| || ||||| || | |||
Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428
Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339
|||||| | | ||||| | || |||||||| |||||||||| |||||| | |||||
Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368
Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399
||||||||||| || | ||| | ||||||||||||||||| ||||| | ||||||||
Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308
Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459
||||||||||| ||||||||||| ||||| ||||| || | || ||||| ||||| ||
Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248
Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGACAGAGTCACAGAACTATGG 179519
| || ||||| || | |||||||||||||||| | || || ||| |||
Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188
Query 179520 TTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGG 179579
||| || ||||||||| ||||||| || || |||||||| || || ||||| || |||||
Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128
Query 179580 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGC 179639
|||||| || |||||||| ||||| ||||| ||||| || ||||| ||||||||| | ||
Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068
Query 179640 TGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAA 179699
||| ||||| ||||| || || ||||| |||||| | || | ||||| ||||| || ||
Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008
Query 179700 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACAC 179759
| | || ||||||||||| ||||| || | |||| ||||| ||||| |||||||
Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948
Query 179760 ATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGC 179819
||||| || | | |||||||| | | |||||||||||||||||||| ||||| ||
Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888
Query 179820 ACACAACTTCCCACTCGA 179837
|||||| |||||||| ||
Sbjct 2887 ACACAATTTCCCACTAGA 2870
>seq260
Length=66046
Score = 508 bits (562), Expect = 7e-139
Identities = 730/1020 (72%), Gaps = 8/1020 (1%)
Strand=Plus/Minus
Query 180015 GGGTGGTTCGATGTCCTGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGG 180074
|| ||||| ||| || | || ||||||||| || || || ||||||||| | ||||||
Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598
Query 180075 TCTGGACTACTACTTCTTCCC-ACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCAC 180133
|| || ||| || || ||||| ||||| ||| | || | || |||||| | ||||| ||
Sbjct 57597 TCAGGTCTATTA-TTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539
Query 180134 AGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAA 180193
| | ||||| | |||||| || || || | ||| |||| ||| | || ||| ||
Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479
Query 180194 CTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACT 180253
|||| | || | ||||| || || || ||| | |||||| |||||| || || | |
Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTT 57420
Query 180254 T-TGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGA 180312
| |||||||| || |||| || |||| || |||||||||||||| || || ||||
Sbjct 57419 TATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGA 57360
Query 180313 ATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAAC 180372
|| || || || |||||||| || | |||||||||||||||| || || || |||
Sbjct 57359 CATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAA 57300
Query 180373 TGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTG 180432
| |||||| || || || || || || || |||||||| |||| ||||| || |
Sbjct 57299 TCGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAG 57240
Query 180433 TATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCT 180492
| ||||| |||||| | || |||||| | ||||| || |||||||| ||||| ||
Sbjct 57239 TTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGA 57180
Query 180493 CTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCT-TTCTTC-AGGGTTTCCACAACTG 180550
|||||| || ||||| || || | || || | | |||||| | ||||||||||||||
Sbjct 57179 GTTTTGGTGTTGCAGCTATTTTCCGTTT--TATTTTATTCTTCCAAGGTTTCCACAACTG 57122
Query 180551 GACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATC 180610
||| | || || || ||||||||||| ||||||||| | ||||| | || | || |
Sbjct 57121 GACTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTG 57062
Query 180611 AGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACAC 180670
||||| ||||||| ||| || || || || || | ||||||||| || ||||||||
Sbjct 57061 TGCAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACAC 57002
Query 180671 CTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCG 180730
||| || ||| || |||| |||| || |||||||| ||| | || || ||||| ||
Sbjct 57001 ATTTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCG 56942
Query 180731 CTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCAT 180790
||| ||||| || || |||||| | || |||||||| || || ||| | ||||| || ||
Sbjct 56941 CTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTAT 56882
Query 180791 GTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCT 180850
||| ||||| || || | ||| ||||||| || |||| | | || | || |
Sbjct 56881 GTTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATT 56822
Query 180851 CAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTT 180910
|| | ||||| | ||||||||| ||||| || | || || ||||| || || ||
Sbjct 56821 AAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATT 56762
Query 180911 CGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACC 180970
|| || || || || || || || || ||||||||||| | ||||| ||| |||| |
Sbjct 56761 TGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGC 56702
Query 180971 TGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030
| ||||| || || ||||| || | ||||| || || ||| ||||| | || |||||
Sbjct 56701 TCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 56642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610326746709120
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