Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq133 107 2e-18 seq43 107 2e-18 >seq133 Length=726431 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||||| |||| |||| || | || || || || || || ||||||||| Sbjct 170689 TGCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 170748 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||| |||||||| || ||||| | || || ||||| || || || | Sbjct 170749 ACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAG 170808 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| |||| | || | ||||| | || || | Sbjct 170809 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCA 170868 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || || | ||||||||||| || || || ||||| ||||| Sbjct 170869 CTTCGAGCGTAATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 170917 >seq43 Length=247289 Score = 107 bits (118), Expect = 2e-18 Identities = 228/340 (67%), Gaps = 3/340 (1%) Strand=Plus/Plus Query 131742 AGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTAC 131801 |||| || ||||| ||||||||||| || | |||| || | ||||| |||||||| | Sbjct 177494 AGTCGAAGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGC 177553 Query 131802 CGCCT---TGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAAC 131858 ||||| || | || | || | ||| |||| | ||||||| ||||||| | | | Sbjct 177554 CGCCTCCCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGC 177613 Query 131859 CGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGT 131918 ||||| | || ||||||| |||||| || |||| | ||| ||||| | | Sbjct 177614 CGTTGCTGGAGCCGTTGGTGCCGCGGATGTAGGACCCCGTGGCACGGATGTTGTGCATGC 177673 Query 131919 TGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGA 131978 | || || || || || || | |||||||| ||||| | | || |||| |||| Sbjct 177674 TCAGGCCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTAGA 177733 Query 131979 TACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTGTTGGTGAA 132038 | || || | |||||| || ||| |||| ||||| ||||||| ||| || | Sbjct 177734 TGCCCTCGATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGCGGG 177793 Query 132039 ATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAA 132078 |||||||| |||| ||||| |||||| || || Sbjct 177794 GGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGAGTGAA 177833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932463095888