Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq43 116 1e-20
>seq43
Length=247289
Score = 116 bits (128), Expect = 1e-20
Identities = 290/433 (67%), Gaps = 7/433 (2%)
Strand=Plus/Minus
Query 256190 CAAATCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGC 256249
|| |||||||| ||| || || |||| || || | |||| ||| | |||||||
Sbjct 175352 CAGATCCTGGGCAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTACGTGCGCCGC 175293
Query 256250 GTTCGCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTACGACTC 256309
|| | |||||||||||| | |||||||||||| || || || ||||| | || ||
Sbjct 175292 GTGCTGTCCGGCGAGTTCACGGTGGTGAACCAGCACCTGCTGCACGACCTCACCCGCCTG 175233
Query 256310 GGTCTGTGGAACGAGAAGATGCAACAACGCATAATTCG-GGCCCGTGGGTCGGTGCAGAA 256368
|| |||||| ||| | ||| || |||| | | || | ||||||||||||
Sbjct 175232 GGCCTGTGGGACGGCGACATG-AAGAACGAGCTGGTGGCGGGCAACGGGTCGGTGCAGGG 175174
Query 256369 CATTGAGCGCTTGCCGTTCCGCTTGCGCGAGGTATACCGCACGGTATGGGAGATGCCGCA 256428
| | || | ||| |||| | | | | ||| ||||| |||||||| |||
Sbjct 175173 CCTGGACATCC--CCGACGCGCTCAAG-GCGCTGTACAAGACGGTGTGGGAGATCAAGCA 175117
Query 256429 ACGATTGTTGGTCGACTTGTGCGCAGCACGACAACCGTTTGTGGATCAGTCGCAAAGCCT 256488
|| | |||| ||| || ||| | || ||| | |||||||| || | |
Sbjct 175116 GCGCACGCTGGTGGACATGGCCGCGGATCGCGGCGCGTACATCGATCAGTCCCAGTCCTT 175057
Query 256489 CAACCTCTACTTTCCGGTGCCCAACTTTAA-ACGCTTGACCAACGCACACTTTTACGGGT 256547
|||| | || | ||| ||||||||| | ||| ||| | ||||| |||| |
Sbjct 175056 CAACGTGCACATGTCGGACCCCAACTTTGGCAAGCTC-ACCTCCCTCCACTTCTACGCCT 174998
Query 256548 GGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCAGCGGCCGACCCGA 256607
|| || || ||||||||||| |||||||||||||||||||| | ||||||||| | |
Sbjct 174997 GGAAGAAGGGGCTGAAGACGGGGATGTACTACCTGCGCACCCGCGCCGCGGCCGACGCCA 174938
Query 256608 TCCAATTCACCGT 256620
|| | ||||||||
Sbjct 174937 TCAAGTTCACCGT 174925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588328388892430
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |