Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq43 116 1e-20 >seq43 Length=247289 Score = 116 bits (128), Expect = 1e-20 Identities = 290/433 (67%), Gaps = 7/433 (2%) Strand=Plus/Minus Query 256190 CAAATCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGC 256249 || |||||||| ||| || || |||| || || | |||| ||| | ||||||| Sbjct 175352 CAGATCCTGGGCAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTACGTGCGCCGC 175293 Query 256250 GTTCGCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTACGACTC 256309 || | |||||||||||| | |||||||||||| || || || ||||| | || || Sbjct 175292 GTGCTGTCCGGCGAGTTCACGGTGGTGAACCAGCACCTGCTGCACGACCTCACCCGCCTG 175233 Query 256310 GGTCTGTGGAACGAGAAGATGCAACAACGCATAATTCG-GGCCCGTGGGTCGGTGCAGAA 256368 || |||||| ||| | ||| || |||| | | || | |||||||||||| Sbjct 175232 GGCCTGTGGGACGGCGACATG-AAGAACGAGCTGGTGGCGGGCAACGGGTCGGTGCAGGG 175174 Query 256369 CATTGAGCGCTTGCCGTTCCGCTTGCGCGAGGTATACCGCACGGTATGGGAGATGCCGCA 256428 | | || | ||| |||| | | | | ||| ||||| |||||||| ||| Sbjct 175173 CCTGGACATCC--CCGACGCGCTCAAG-GCGCTGTACAAGACGGTGTGGGAGATCAAGCA 175117 Query 256429 ACGATTGTTGGTCGACTTGTGCGCAGCACGACAACCGTTTGTGGATCAGTCGCAAAGCCT 256488 || | |||| ||| || ||| | || ||| | |||||||| || | | Sbjct 175116 GCGCACGCTGGTGGACATGGCCGCGGATCGCGGCGCGTACATCGATCAGTCCCAGTCCTT 175057 Query 256489 CAACCTCTACTTTCCGGTGCCCAACTTTAA-ACGCTTGACCAACGCACACTTTTACGGGT 256547 |||| | || | ||| ||||||||| | ||| ||| | ||||| |||| | Sbjct 175056 CAACGTGCACATGTCGGACCCCAACTTTGGCAAGCTC-ACCTCCCTCCACTTCTACGCCT 174998 Query 256548 GGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCAGCGGCCGACCCGA 256607 || || || ||||||||||| |||||||||||||||||||| | ||||||||| | | Sbjct 174997 GGAAGAAGGGGCTGAAGACGGGGATGTACTACCTGCGCACCCGCGCCGCGGCCGACGCCA 174938 Query 256608 TCCAATTCACCGT 256620 || | |||||||| Sbjct 174937 TCAAGTTCACCGT 174925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588328388892430