Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq90 125 9e-24 seq99 120 4e-22 >seq90 Length=671320 Score = 125 bits (138), Expect = 9e-24 Identities = 153/208 (74%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || ||||| |||||||||||||| || || |||||| || || Sbjct 288501 GGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTTGAGAAGGTGAGGCC 288442 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| ||||||||| | |||| | || |||||||| ||||| ||||||| ||| Sbjct 288441 GGGCATGAGGTGCCGCTTCTTGAGCCAGTAGATGGCACAAAAGGAGCCGGAGAAGAGGAT 288382 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 |||||||| || || || || | || |||| || | ||| |||| | | | Sbjct 288381 GCCCTCCACGCAGGCAAAGGCCACCAGCCGCTGCGC---GAAGCTGGACCCGCTGCCGAT 288325 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTC 130222 |||| | | ||||||| |||||||||| Sbjct 288324 CCACCTGAGGGCCCACTCCGCCTTTTTC 288297 >seq99 Length=333813 Score = 120 bits (132), Expect = 4e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || ||||| || ||||||||||| || || |||||| ||| || Sbjct 93403 GGCAAAGTCGGTGTGCAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCC 93344 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| ||||||||||||| |||| | || | || || ||||| |||||||| || Sbjct 93343 CGGCATGAGCCCCCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAATAT 93284 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 130173 |||||||| || || || || | || ||||| || || Sbjct 93283 GCCCTCCACGCAGGCAAAGGCGACCAGGCGCTCGGCGAA 93245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432308815440