Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq90 125 9e-24
seq99 120 4e-22
>seq90
Length=671320
Score = 125 bits (138), Expect = 9e-24
Identities = 153/208 (74%), Gaps = 3/208 (1%)
Strand=Plus/Minus
Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074
|||||| || ||| || ||||| |||||||||||||| || || |||||| || ||
Sbjct 288501 GGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTTGAGAAGGTGAGGCC 288442
Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134
|||||||| ||||||||| | |||| | || |||||||| ||||| ||||||| |||
Sbjct 288441 GGGCATGAGGTGCCGCTTCTTGAGCCAGTAGATGGCACAAAAGGAGCCGGAGAAGAGGAT 288382
Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194
|||||||| || || || || | || |||| || | ||| |||| | | |
Sbjct 288381 GCCCTCCACGCAGGCAAAGGCCACCAGCCGCTGCGC---GAAGCTGGACCCGCTGCCGAT 288325
Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTC 130222
|||| | | ||||||| ||||||||||
Sbjct 288324 CCACCTGAGGGCCCACTCCGCCTTTTTC 288297
>seq99
Length=333813
Score = 120 bits (132), Expect = 4e-22
Identities = 122/159 (77%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074
|||||| || ||| || ||||| || ||||||||||| || || |||||| ||| ||
Sbjct 93403 GGCAAAGTCGGTGTGCAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCC 93344
Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134
|||||||| ||||||||||||| |||| | || | || || ||||| |||||||| ||
Sbjct 93343 CGGCATGAGCCCCCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAATAT 93284
Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 130173
|||||||| || || || || | || ||||| || ||
Sbjct 93283 GCCCTCCACGCAGGCAAAGGCGACCAGGCGCTCGGCGAA 93245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618432308815440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |