Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq99 123 3e-23 seq90 116 4e-21 seq43 87.8 2e-12 >seq99 Length=333813 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || || ||||| || |||| ||||| || || ||||| || |||||||| || |||||| Sbjct 93245 TTCGCCGAGCGCCTGGTCGCCTTTGCCTGCGTGGAGGGCATATTCTTCTCCGGCTCCTTC 93304 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||| | || || ||| | |||||||| || |||||||| || || ||||||||||||| Sbjct 93305 TGCTCCATCTACTGGGTGAAGAAGCGGGGGCTCATGCCGGGGCTGACCTTCTCCAACGAG 93364 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || ||||| || || ||||| || ||| || ||||| Sbjct 93365 CTCATCTCCCGCGATGAGGGCCTGCACACCGACTTTGC 93402 >seq90 Length=671320 Score = 116 bits (128), Expect = 4e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || |||| || | || ||||| || || ||||| ||| ||||||| || ||||| Sbjct 288342 CTTCGCGCAGCGGCTGGTGGCCTTTGCCTGCGTGGAGGGCATCCTCTTCTCCGGCTCCTT 288401 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 || || || || |||||||||||||| |||||||| || ||| |||||| ||||| Sbjct 288402 TTGTGCCATCTACTGGCTCAAGAAGCGGCACCTCATGCCCGGCCTCACCTTCTCAAACGA 288461 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| ||||| ||||| ||||| || ||| || ||||| Sbjct 288462 GCTCATCTCCCGTGATGAGGGCCTGCACACCGACTTTGC 288500 >seq43 Length=247289 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 104669 AACCAAGGTGACGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGA 104727 ||||| || | ||||||||||| ||| ||||| ||||||| ||| |||||||| || || Sbjct 177278 AACCACGGCAAGGAGGAGGCGCG-TGCGCGCGACCTCTTCTACGCGCTCTGGATCCCCGA 177220 Query 104728 TCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGC 104787 |||||||||||| | || |||| | || | ||||| ||||| || || || |||| Sbjct 177219 CCTCTTCATGAAGCGCGTCGAGGCCAATGAGACCTGGTCCCTCTTCTGCCCCAACGAGGC 177160 Query 104788 ACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACAC 104835 || || | | || ||| | ||| ||||| || ||||| ||||| Sbjct 177159 CCCGGGCATGGCAGACTGCTG-GGGCCCCGAGTTCGAGGCCCTGTACAC 177112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258073255760