Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq43 232 7e-56 seq99 134 2e-26 seq205 107 2e-18 >seq43 Length=247289 Score = 232 bits (256), Expect = 7e-56 Identities = 261/343 (76%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 79469 AGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGC 79528 |||| | ||||||||| ||||| ||||| || || ||||| || | ||||||||||||| Sbjct 177494 AGTCGAAGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGC 177553 Query 79529 CGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGC 79588 |||| ||||||| ||||| || || |||| |||||| || || |||||||||||||||| Sbjct 177554 CGCCTCCCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGC 177613 Query 79589 CGTCGGCGACGCCGTTCGTCCCGTTGATTCGT-GTACCGC-TCGCCCGAATGTTCGAGCA 79646 ||| | | |||||| || ||| ||| || | ||| | | || || ||||| | ||| Sbjct 177614 CGTTGCTGGAGCCGTTGGTGCCGCGGAT--GTAGGACCCCGTGGCACGGATGTT-GTGCA 177670 Query 79647 -GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGT 79705 | | |||||||| || | |||| |||||| |||||||||||| ||||| |||| Sbjct 177671 TGCTCAGGCCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGT 177730 Query 79706 AGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT 79765 ||||||||||||| |||| ||||||| | || ||||||||| |||| ||| ||| Sbjct 177731 AGATGCCCTCGATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGC 177790 Query 79766 TGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 | || ||||||||||| || || |||| ||||| ||||| Sbjct 177791 GGGGGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGAGTGAA 177833 Score = 206 bits (228), Expect = 3e-48 Identities = 251/336 (75%), Gaps = 6/336 (2%) Strand=Plus/Minus Query 19196 TTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGC 19255 ||||| ||||| |||| || || ||||||||||| || | ||| ||| |||| | Sbjct 177833 TTCACTCACGCCTCGCCCACGCTGTTCAACGCCGGCACCCCCCGCCCCCAGCTGTCCTCC 177774 Query 19256 TGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAG 19315 || ||||||||| | ||||||| |||||||| |||||||||||||| ||||| |||||| Sbjct 177773 TGCTTCCTAGTGTCCATGAAGGCCGACAGCATCGAGGGCATCTACGACACGCTGAAGGAG 177714 Query 19316 TGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCG-GT 19373 |||||| |||||| |||| | || || ||||| | | ||| | || ||||| | Sbjct 177713 TGCGCGGCCATCTCTAAGTCCGCGGGCGGCATCGGCCTGAGCATGCAC-AACATCCGTGC 177655 Query 19374 CGAGTGGTAC-ACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTC 19432 | | ||| | || ||| || || ||||| | |||| ||||| || ||||| Sbjct 177654 CACGGGGTCCTAC--ATCCGCGGCACCAACGGCTCCAGCAACGGCATCGTGCCCATGCTG 177597 Query 19433 CGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCG 19492 |||||||||||| |||| || | ||||| ||||||| |||||||| ||||||||| | Sbjct 177596 CGCGTCTTCAACGACACCGCGCGCTACGTGGACCAGGGAGGCGGCAAGCGCAAGGGCGCC 177537 Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTC 19528 || ||||| ||||||||||| ||||| || ||| || Sbjct 177536 TTTGCCATGTACCTCGAGCCCTGGCATGCCGACATC 177501 Score = 185 bits (204), Expect = 1e-41 Identities = 306/435 (70%), Gaps = 10/435 (2%) Strand=Plus/Minus Query 20419 CCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCG 20478 ||||||| |||| ||||||||| |||||||||||||||| |||||||||| |||| || Sbjct 175353 CCAGATCCTGGGCAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTACGTGCGCCG 175294 Query 20479 TACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAGA- 20537 ||| |||| |||||| |||| ||| |||||||| | | |||| | || | Sbjct 175293 CGTGCTGTCCGGCGAGTTCACGGTGGTGAACCAGCACCTGCTGCACGACCT-CACCCGCC 175235 Query 20538 TCGATATGTGGTCGCCCAAAATTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTCCAGG 20597 | | ||||| | | || ||||| || | || | | |||| || |||| Sbjct 175234 TGGGCCTGTGGGACGGCGACATGAAGAACGAGCTGGTGGCGGGCAACGGGTCGGTGCAGG 175175 Query 20598 CATTGGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGA 20657 |||| |||||| | ||||||| | |||| ||| || ||||| ||| || Sbjct 175174 GCCTGGACATCCCCGACGCGCTCAAGGCGCTGTACAAGACGGTGTGGGAGATCA---AGC 175118 Query 20658 AGAGCA---TCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGC 20714 || ||| | | |||||||| || ||||||||||| |||||||| ||||||||||| Sbjct 175117 AGCGCACGCTGGTGGACATGGCCGCGGATCGCGGCGCGTACATCGATCAGTCCCAGTCCT 175058 Query 20715 TCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCT 20774 |||| || |||| | | || | | | | ||||| | |||| | || | |||| || Sbjct 175057 TCAACGTGCACATGTCGGACCCCAACTTTGGCAAGCTCACCTCCCTCCACTTCTACGCCT 174998 Query 20775 GGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACCCGAGCCAAGGCCAAGGCGC 20834 || | |||||||| |||||||| |||||||| ||||| ||||| ||| |||| | || | Sbjct 174997 GGAAGAAGGGGCTGAAGACGGGGATGTACTACCTGCGCACCCGCGCCGCGGCCGACGC-C 174939 Query 20835 AGCAGGTT-ACCGTG 20848 | || ||| |||||| Sbjct 174938 ATCAAGTTCACCGTG 174924 Score = 158 bits (174), Expect = 1e-33 Identities = 279/404 (69%), Gaps = 2/404 (0%) Strand=Plus/Plus Query 78183 GGCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTG 78242 |||||| || |||| |||||||| |||||||| || ||||||||||| |||| | ||| Sbjct 174951 GGCGCGGGTGCGCAGGTAGTACATCCCCGTCTTCAGCCCCTTCTTCCAGGCGTAGAAGTG 175010 Query 78243 CATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTG 78302 | | |||||| | | | |||| | |||| | ||||| ||||||||||| Sbjct 175011 GAGGGAGGTGAGCTTGCCAAAGTTGGGGTCCGACATGTGCACGTTGAAGGACTGGGACTG 175070 Query 78303 GTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 ||||||||||| ||||| || || |||||||| | | || ||| |||||||| Sbjct 175071 ATCGATGTACGCGCCGCGATCCGCGGCCATGTCCACCAGCGTGCGCTGCTTGATCTCCCA 175130 Query 78363 GATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCACC 78422 | ||| ||| | ||||| ||| | || |||||||||| | || || ||| Sbjct 175131 CACCGTCTTGTACAGCGCCTTGAGCGCGTCGGGGATGTCCAGGCCCTGCACCGACCCGTT 175190 Query 78423 GGCTCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGA-TCTTCTGAAGATCCC 78481 | | ||| | || ||||| || | || ||| | | | || || || Sbjct 175191 GCCCGCCACCAGCTCGTTCTTCATGTCGCCGTCCCACAGGCCCAGGCGGGTG-AGGTCGT 175249 Query 78482 GGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGT 78541 | | ||||||| |||| | || ||||||||||| ||| ||||||| |||||||| Sbjct 175250 GCAGCAGGTGCTGGTTCACCACCGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGT 175309 Query 78542 TGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGG 78585 || |||||||||||||||| ||||||||| |||| ||||||| Sbjct 175310 TGCTCGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGG 175353 Score = 107 bits (118), Expect = 2e-18 Identities = 232/342 (68%), Gaps = 15/342 (4%) Strand=Plus/Plus Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 |||||| |||||||| || ||||| || || || || | || |||| |||||||| | Sbjct 175597 GGCGGTGGGCATGGGCGCCACCAGGAGCGAGTTTCGCACGCCGTGCGACTTGATCTGCTC 175656 Query 78654 CTTTAGGCCGTCCCAAAATTCATTCG-CCGCGATCCC--------CCACATG--TCCGGT 78702 ||||||||||| | | || |||| ||| || |||| ||| | Sbjct 175657 GCGCAGGCCGTCCCAG--TCGAAGCGACCGCTGTCCGGCTTCACGCCCCATGCATCCTGC 175714 Query 78703 TGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTG 78762 || || | || ||| || ||||||| | |||||||||| | ||| |||||| Sbjct 175715 TGCAGCACGCCGCGCGACATGGGGGACCCCTCGTACGTCTCGTAGGGGCCCAGGTCCTTG 175774 Query 78763 GCGAGTTCGCATGAC-TCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTT 78821 || || |||| || | ||| || || || ||||| |||||||||||| | ||| Sbjct 175775 GCCAGGGCGCAGGAGGTGGAG-AGCGCGGCAAAGTACAGCGCCTCGAAGATGTCGCGGTT 175833 Query 78822 GAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAG 78881 |||| | |||| || | |||||| | ||||| |||| |||||| || ||||| Sbjct 175834 CAGCTGGGCGGCCTCGGGCGAGTCGAAGGGCAGGCCCAGCAGGATGAAGGTGTCCGCCAG 175893 Query 78882 GCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT 78923 |||||| || || | |||| || ||||| ||||||||||| Sbjct 175894 GCCCTGCACCCCCAGGCCGATGGGGCGGTGACGCATGTTGCT 175935 Score = 100 bits (110), Expect = 3e-16 Identities = 225/336 (67%), Gaps = 9/336 (3%) Strand=Plus/Minus Query 20084 AATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATG 20143 || ||||| ||||| || |||| | || || ||||||||||| ||| ||||| || Sbjct 175932 AACATGCGTCACCGCCCCATCGGCCTGGGGGTGCAGGGCCTGGCGGACACCTTCATCCTG 175873 Query 20144 CTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCC 20203 || ||||| | |||||| ||| |||| | |||| ||| | |||||||||||| Sbjct 175872 CTGGGCCTGCCCTTCGACTCGCCCGAGGCCGCCCAGCTGAACCGCGACATCTTCGAGGCG 175813 Query 20204 GTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAG 20263 ||||| || || ||| || |||| || ||||| || ||||| |||||| Sbjct 175812 CTGTACTTTGCCGCGCTCTCCACCTCCTGCGCCCTGGCCAAGGACCTGGGCCCCTACGAG 175753 Query 20264 ACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCA-- 20321 |||| | ||||||| ||| ||| || | || |||| ||| |||||||| | Sbjct 175752 ACGTACGAGGGGTCCCCCATGTCGCGCGGCGTGCTGCAGCAGGATGCATGGGGCGTGAAG 175693 Query 20322 -CTGAGAATG--AGTTT----TGGAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTT 20374 | || | | | || ||| || ||| | |||||||| | ||||| | Sbjct 175692 CCGGACAGCGGTCGCTTCGACTGGGACGGCCTGCGCGAGCAGATCAAGTCGCACGGCGTG 175633 Query 20375 CGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCC 20410 || |||||| | || || ||||||||||| |||||| Sbjct 175632 CGAAACTCGCTCCTGGTGGCGCCCATGCCCACCGCC 175597 >seq99 Length=333813 Score = 134 bits (148), Expect = 2e-26 Identities = 236/338 (70%), Gaps = 8/338 (2%) Strand=Plus/Plus Query 59785 AGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTAC 59843 ||||||| | ||||||| | ||| ||| || |||| |||||| ||||| |||| Sbjct 93057 AGGCCCGCGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACAGCGAGATGTAC 93115 Query 59844 TCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCC 59903 || || | ||| || ||||||| ||| |||||| ||||||| ||| Sbjct 93116 AGCCTGCTGCTGGATGCGTACATCAAGGACCCGCGGCAGAAGGACATGCTGTTCCACGCC 93175 Query 59904 ATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT---GAGT 59960 | |||||| || | || || | || || || ||||| || ||||||| ||| Sbjct 93176 ACCGAGACGGTACCAGTGGTCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATCTCGAGC 93235 Query 59961 CCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTC 60020 | | ||| ||| || | || || | || ||||| |||||||| || || |||||| Sbjct 93236 GCAG-AGCG--ATTCGCCGAGCGCCTGGTCGCCTTTGCCTGCGTGGAGGGCATATTCTTC 93292 Query 60021 TCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGT 60080 || ||||| ||||| | || | |||| | || ||||| || ||||||||||| |||| Sbjct 93293 TCCGGCTCCTTCTGCTCCATCTACTGGGTGAAGAAGCGGGGGCTCATGCCGGGGCTGACC 93352 Query 60081 TTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||||||||| || ||||| || |||||||| || Sbjct 93353 TTCTCCAACGAGCTCATCTCCCGCGATGAGGGCCTGCA 93390 >seq205 Length=658713 Score = 107 bits (118), Expect = 2e-18 Identities = 132/177 (75%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 159458 CCGAACTGATCGAA-AT-TTGAACGCTTCTGGGGGTCGCTCAGGACCTCATAGGCCTCCT 159515 |||||||| ||| | || ||| ||||||| |||||||| ||| ||| || ||||| | Sbjct 613247 CCGAACTGGTCGTAGATCTTG--CGCTTCTCGGGGTCGCGCAGCGTCTCGTACGCCTCGT 613304 Query 159516 GGACTTTCTTGAACTTCTCGGCGTCACCGCCCTTGTCGGGGTGGTGCTCGCGGGCAAGTT 159575 || | |||||||||||||| ||| || |||||||||||||| | || |||| || | Sbjct 613305 TGATCTCCTTGAACTTCTCGGGGTCGCCACCCTTGTCGGGGTGCTCCTTCAGGGCCAGCT 613364 Query 159576 TGCGGTACGCCTTTTTGATGTCGGTCTCCGAGGCGCTCCGGTCGAGGCCTAGGACGT 159632 |||||| ||||| || | || ||||| |||| | ||||| | || |||| || Sbjct 613365 TGCGGTGGGCCTTCTTCACTTCCGTCTCGCTGGCGTTGCGGTCCACCCCCAGGATGT 613421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522235646560