Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq43 232 7e-56
seq99 134 2e-26
seq205 107 2e-18
>seq43
Length=247289
Score = 232 bits (256), Expect = 7e-56
Identities = 261/343 (76%), Gaps = 6/343 (2%)
Strand=Plus/Plus
Query 79469 AGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGC 79528
|||| | ||||||||| ||||| ||||| || || ||||| || | |||||||||||||
Sbjct 177494 AGTCGAAGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGC 177553
Query 79529 CGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGC 79588
|||| ||||||| ||||| || || |||| |||||| || || ||||||||||||||||
Sbjct 177554 CGCCTCCCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGC 177613
Query 79589 CGTCGGCGACGCCGTTCGTCCCGTTGATTCGT-GTACCGC-TCGCCCGAATGTTCGAGCA 79646
||| | | |||||| || ||| ||| || | ||| | | || || ||||| | |||
Sbjct 177614 CGTTGCTGGAGCCGTTGGTGCCGCGGAT--GTAGGACCCCGTGGCACGGATGTT-GTGCA 177670
Query 79647 -GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGT 79705
| | |||||||| || | |||| |||||| |||||||||||| ||||| ||||
Sbjct 177671 TGCTCAGGCCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGT 177730
Query 79706 AGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT 79765
||||||||||||| |||| ||||||| | || ||||||||| |||| ||| |||
Sbjct 177731 AGATGCCCTCGATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGC 177790
Query 79766 TGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808
| || ||||||||||| || || |||| ||||| |||||
Sbjct 177791 GGGGGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGAGTGAA 177833
Score = 206 bits (228), Expect = 3e-48
Identities = 251/336 (75%), Gaps = 6/336 (2%)
Strand=Plus/Minus
Query 19196 TTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGC 19255
||||| ||||| |||| || || ||||||||||| || | ||| ||| |||| |
Sbjct 177833 TTCACTCACGCCTCGCCCACGCTGTTCAACGCCGGCACCCCCCGCCCCCAGCTGTCCTCC 177774
Query 19256 TGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAG 19315
|| ||||||||| | ||||||| |||||||| |||||||||||||| ||||| ||||||
Sbjct 177773 TGCTTCCTAGTGTCCATGAAGGCCGACAGCATCGAGGGCATCTACGACACGCTGAAGGAG 177714
Query 19316 TGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCG-GT 19373
|||||| |||||| |||| | || || ||||| | | ||| | || ||||| |
Sbjct 177713 TGCGCGGCCATCTCTAAGTCCGCGGGCGGCATCGGCCTGAGCATGCAC-AACATCCGTGC 177655
Query 19374 CGAGTGGTAC-ACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTC 19432
| | ||| | || ||| || || ||||| | |||| ||||| || |||||
Sbjct 177654 CACGGGGTCCTAC--ATCCGCGGCACCAACGGCTCCAGCAACGGCATCGTGCCCATGCTG 177597
Query 19433 CGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCG 19492
|||||||||||| |||| || | ||||| ||||||| |||||||| ||||||||| |
Sbjct 177596 CGCGTCTTCAACGACACCGCGCGCTACGTGGACCAGGGAGGCGGCAAGCGCAAGGGCGCC 177537
Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTC 19528
|| ||||| ||||||||||| ||||| || ||| ||
Sbjct 177536 TTTGCCATGTACCTCGAGCCCTGGCATGCCGACATC 177501
Score = 185 bits (204), Expect = 1e-41
Identities = 306/435 (70%), Gaps = 10/435 (2%)
Strand=Plus/Minus
Query 20419 CCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCG 20478
||||||| |||| ||||||||| |||||||||||||||| |||||||||| |||| ||
Sbjct 175353 CCAGATCCTGGGCAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTACGTGCGCCG 175294
Query 20479 TACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAGA- 20537
||| |||| |||||| |||| ||| |||||||| | | |||| | || |
Sbjct 175293 CGTGCTGTCCGGCGAGTTCACGGTGGTGAACCAGCACCTGCTGCACGACCT-CACCCGCC 175235
Query 20538 TCGATATGTGGTCGCCCAAAATTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTCCAGG 20597
| | ||||| | | || ||||| || | || | | |||| || ||||
Sbjct 175234 TGGGCCTGTGGGACGGCGACATGAAGAACGAGCTGGTGGCGGGCAACGGGTCGGTGCAGG 175175
Query 20598 CATTGGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGA 20657
|||| |||||| | ||||||| | |||| ||| || ||||| ||| ||
Sbjct 175174 GCCTGGACATCCCCGACGCGCTCAAGGCGCTGTACAAGACGGTGTGGGAGATCA---AGC 175118
Query 20658 AGAGCA---TCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGC 20714
|| ||| | | |||||||| || ||||||||||| |||||||| |||||||||||
Sbjct 175117 AGCGCACGCTGGTGGACATGGCCGCGGATCGCGGCGCGTACATCGATCAGTCCCAGTCCT 175058
Query 20715 TCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCT 20774
|||| || |||| | | || | | | | ||||| | |||| | || | |||| ||
Sbjct 175057 TCAACGTGCACATGTCGGACCCCAACTTTGGCAAGCTCACCTCCCTCCACTTCTACGCCT 174998
Query 20775 GGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACCCGAGCCAAGGCCAAGGCGC 20834
|| | |||||||| |||||||| |||||||| ||||| ||||| ||| |||| | || |
Sbjct 174997 GGAAGAAGGGGCTGAAGACGGGGATGTACTACCTGCGCACCCGCGCCGCGGCCGACGC-C 174939
Query 20835 AGCAGGTT-ACCGTG 20848
| || ||| ||||||
Sbjct 174938 ATCAAGTTCACCGTG 174924
Score = 158 bits (174), Expect = 1e-33
Identities = 279/404 (69%), Gaps = 2/404 (0%)
Strand=Plus/Plus
Query 78183 GGCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTG 78242
|||||| || |||| |||||||| |||||||| || ||||||||||| |||| | |||
Sbjct 174951 GGCGCGGGTGCGCAGGTAGTACATCCCCGTCTTCAGCCCCTTCTTCCAGGCGTAGAAGTG 175010
Query 78243 CATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTG 78302
| | |||||| | | | |||| | |||| | ||||| |||||||||||
Sbjct 175011 GAGGGAGGTGAGCTTGCCAAAGTTGGGGTCCGACATGTGCACGTTGAAGGACTGGGACTG 175070
Query 78303 GTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362
||||||||||| ||||| || || |||||||| | | || ||| ||||||||
Sbjct 175071 ATCGATGTACGCGCCGCGATCCGCGGCCATGTCCACCAGCGTGCGCTGCTTGATCTCCCA 175130
Query 78363 GATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCACC 78422
| ||| ||| | ||||| ||| | || |||||||||| | || || |||
Sbjct 175131 CACCGTCTTGTACAGCGCCTTGAGCGCGTCGGGGATGTCCAGGCCCTGCACCGACCCGTT 175190
Query 78423 GGCTCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGA-TCTTCTGAAGATCCC 78481
| | ||| | || ||||| || | || ||| | | | || || ||
Sbjct 175191 GCCCGCCACCAGCTCGTTCTTCATGTCGCCGTCCCACAGGCCCAGGCGGGTG-AGGTCGT 175249
Query 78482 GGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGT 78541
| | ||||||| |||| | || ||||||||||| ||| ||||||| ||||||||
Sbjct 175250 GCAGCAGGTGCTGGTTCACCACCGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGT 175309
Query 78542 TGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGG 78585
|| |||||||||||||||| ||||||||| |||| |||||||
Sbjct 175310 TGCTCGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGG 175353
Score = 107 bits (118), Expect = 2e-18
Identities = 232/342 (68%), Gaps = 15/342 (4%)
Strand=Plus/Plus
Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653
|||||| |||||||| || ||||| || || || || | || |||| |||||||| |
Sbjct 175597 GGCGGTGGGCATGGGCGCCACCAGGAGCGAGTTTCGCACGCCGTGCGACTTGATCTGCTC 175656
Query 78654 CTTTAGGCCGTCCCAAAATTCATTCG-CCGCGATCCC--------CCACATG--TCCGGT 78702
||||||||||| | | || |||| ||| || |||| ||| |
Sbjct 175657 GCGCAGGCCGTCCCAG--TCGAAGCGACCGCTGTCCGGCTTCACGCCCCATGCATCCTGC 175714
Query 78703 TGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTG 78762
|| || | || ||| || ||||||| | |||||||||| | ||| ||||||
Sbjct 175715 TGCAGCACGCCGCGCGACATGGGGGACCCCTCGTACGTCTCGTAGGGGCCCAGGTCCTTG 175774
Query 78763 GCGAGTTCGCATGAC-TCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTT 78821
|| || |||| || | ||| || || || ||||| |||||||||||| | |||
Sbjct 175775 GCCAGGGCGCAGGAGGTGGAG-AGCGCGGCAAAGTACAGCGCCTCGAAGATGTCGCGGTT 175833
Query 78822 GAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAG 78881
|||| | |||| || | |||||| | ||||| |||| |||||| || |||||
Sbjct 175834 CAGCTGGGCGGCCTCGGGCGAGTCGAAGGGCAGGCCCAGCAGGATGAAGGTGTCCGCCAG 175893
Query 78882 GCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT 78923
|||||| || || | |||| || ||||| |||||||||||
Sbjct 175894 GCCCTGCACCCCCAGGCCGATGGGGCGGTGACGCATGTTGCT 175935
Score = 100 bits (110), Expect = 3e-16
Identities = 225/336 (67%), Gaps = 9/336 (3%)
Strand=Plus/Minus
Query 20084 AATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATG 20143
|| ||||| ||||| || |||| | || || ||||||||||| ||| ||||| ||
Sbjct 175932 AACATGCGTCACCGCCCCATCGGCCTGGGGGTGCAGGGCCTGGCGGACACCTTCATCCTG 175873
Query 20144 CTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCC 20203
|| ||||| | |||||| ||| |||| | |||| ||| | ||||||||||||
Sbjct 175872 CTGGGCCTGCCCTTCGACTCGCCCGAGGCCGCCCAGCTGAACCGCGACATCTTCGAGGCG 175813
Query 20204 GTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAG 20263
||||| || || ||| || |||| || ||||| || ||||| ||||||
Sbjct 175812 CTGTACTTTGCCGCGCTCTCCACCTCCTGCGCCCTGGCCAAGGACCTGGGCCCCTACGAG 175753
Query 20264 ACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCA-- 20321
|||| | ||||||| ||| ||| || | || |||| ||| |||||||| |
Sbjct 175752 ACGTACGAGGGGTCCCCCATGTCGCGCGGCGTGCTGCAGCAGGATGCATGGGGCGTGAAG 175693
Query 20322 -CTGAGAATG--AGTTT----TGGAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTT 20374
| || | | | || ||| || ||| | |||||||| | ||||| |
Sbjct 175692 CCGGACAGCGGTCGCTTCGACTGGGACGGCCTGCGCGAGCAGATCAAGTCGCACGGCGTG 175633
Query 20375 CGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCC 20410
|| |||||| | || || ||||||||||| ||||||
Sbjct 175632 CGAAACTCGCTCCTGGTGGCGCCCATGCCCACCGCC 175597
>seq99
Length=333813
Score = 134 bits (148), Expect = 2e-26
Identities = 236/338 (70%), Gaps = 8/338 (2%)
Strand=Plus/Plus
Query 59785 AGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTAC 59843
||||||| | ||||||| | ||| ||| || |||| |||||| ||||| ||||
Sbjct 93057 AGGCCCGCGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACAGCGAGATGTAC 93115
Query 59844 TCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCC 59903
|| || | ||| || ||||||| ||| |||||| ||||||| |||
Sbjct 93116 AGCCTGCTGCTGGATGCGTACATCAAGGACCCGCGGCAGAAGGACATGCTGTTCCACGCC 93175
Query 59904 ATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT---GAGT 59960
| |||||| || | || || | || || || ||||| || ||||||| |||
Sbjct 93176 ACCGAGACGGTACCAGTGGTCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATCTCGAGC 93235
Query 59961 CCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTC 60020
| | ||| ||| || | || || | || ||||| |||||||| || || ||||||
Sbjct 93236 GCAG-AGCG--ATTCGCCGAGCGCCTGGTCGCCTTTGCCTGCGTGGAGGGCATATTCTTC 93292
Query 60021 TCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGT 60080
|| ||||| ||||| | || | |||| | || ||||| || ||||||||||| ||||
Sbjct 93293 TCCGGCTCCTTCTGCTCCATCTACTGGGTGAAGAAGCGGGGGCTCATGCCGGGGCTGACC 93352
Query 60081 TTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118
|||||||||||||| || ||||| || |||||||| ||
Sbjct 93353 TTCTCCAACGAGCTCATCTCCCGCGATGAGGGCCTGCA 93390
>seq205
Length=658713
Score = 107 bits (118), Expect = 2e-18
Identities = 132/177 (75%), Gaps = 4/177 (2%)
Strand=Plus/Plus
Query 159458 CCGAACTGATCGAA-AT-TTGAACGCTTCTGGGGGTCGCTCAGGACCTCATAGGCCTCCT 159515
|||||||| ||| | || ||| ||||||| |||||||| ||| ||| || ||||| |
Sbjct 613247 CCGAACTGGTCGTAGATCTTG--CGCTTCTCGGGGTCGCGCAGCGTCTCGTACGCCTCGT 613304
Query 159516 GGACTTTCTTGAACTTCTCGGCGTCACCGCCCTTGTCGGGGTGGTGCTCGCGGGCAAGTT 159575
|| | |||||||||||||| ||| || |||||||||||||| | || |||| || |
Sbjct 613305 TGATCTCCTTGAACTTCTCGGGGTCGCCACCCTTGTCGGGGTGCTCCTTCAGGGCCAGCT 613364
Query 159576 TGCGGTACGCCTTTTTGATGTCGGTCTCCGAGGCGCTCCGGTCGAGGCCTAGGACGT 159632
|||||| ||||| || | || ||||| |||| | ||||| | || |||| ||
Sbjct 613365 TGCGGTGGGCCTTCTTCACTTCCGTCTCGCTGGCGTTGCGGTCCACCCCCAGGATGT 613421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548522235646560
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