Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq43 206 3e-48 seq99 96.9 4e-15 >seq43 Length=247289 Score = 206 bits (228), Expect = 3e-48 Identities = 247/333 (74%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || || |||||| |||| || ||||||||||| || || | ||| ||| |||| | Sbjct 177833 TTCACTCACGCCTCGCCCACGCTGTTCAACGCCGGCACCCCCCGCCCCCAGCTGTCCTCC 177774 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 |||||||| ||| | ||||||| ||| ||||| ||||||||||| ||||| |||||| Sbjct 177773 TGCTTCCTAGTGTCCATGAAGGCCGACAGCATCGAGGGCATCTACGACACGCTGAAGGAG 177714 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGC 53451 || || |||||| |||| |||| || ||||| | | ||| | ||| ||||||| Sbjct 177713 TGCGCGGCCATCTCTAAGTCCGCGGGCGGCATCGGCCTGAGCATGCAC-AACATCCGTGC 177655 Query 53452 GAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCG 53511 | || | ||| || || |||||| | | | || |||||||| ||||| || Sbjct 177654 CACGGGGTCCTACATCCGCGGCACCAACGGCTCCAGCAACGGCATCGTGCCCATGCTGCG 177595 Query 53512 CGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTT 53571 |||||||||| |||| || || ||||| ||||||| || || ||||||||||| | || Sbjct 177594 CGTCTTCAACGACACCGCGCGCTACGTGGACCAGGGAGGCGGCAAGCGCAAGGGCGCCTT 177535 Query 53572 CGCCATCTACCTCGAGCCGTGGCACGCCGACAT 53604 ||||| ||||||||||| ||||| |||||||| Sbjct 177534 TGCCATGTACCTCGAGCCCTGGCATGCCGACAT 177502 Score = 159 bits (176), Expect = 4e-34 Identities = 288/413 (70%), Gaps = 10/413 (2%) Strand=Plus/Minus Query 55529 CAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGG 55588 |||||| |||||||||||||| |||||||||||||||| |||||||||| ||||||| Sbjct 175352 CAGATCCTGGGCAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTACGTGCGCCGC 175293 Query 55589 ACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGA-T 55647 || | || ||||| || | ||| ||||||| | | ||||| || | | Sbjct 175292 GTGCTGTCCGGCGAGTTCACGGTGGTGAACCAGCACCTGCTGCACGACCT-CACCCGCCT 175234 Query 55648 CAACAAGTGGAACCCGCAGATCAAGACGGATATTGTG-CGG--AACGGGGGGTCCGTCCA 55704 | |||| || | || |||| || | ||| ||| |||||| || || || Sbjct 175233 GGGCCTGTGGGACGGCGACATGAAGAACGAGCTGGTGGCGGGCAACGGG---TCGGTGCA 175177 Query 55705 GAATCTGGAGATTCCTCT-GCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCAC 55763 | ||||| || || ||| ||||||| | | ||| ||||||||||||||| | Sbjct 175176 GGGCCTGGACATCCCCGACGCG-CTCAAGGCGCTGTACAAGACGGTGTGGGAGATCAAGC 175118 Query 55764 AGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTC 55823 || | ||| | |||||| || ||||| || ||||||||||| ||||||||||| Sbjct 175117 AGCGCACGCTGGTGGACATGGCCGCGGATCGCGGCGCGTACATCGATCAGTCCCAGTCCT 175058 Query 55824 TGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGT 55883 | ||| | |||| | | || | | |||| | | ||| | ||||| |||| | Sbjct 175057 TCAACGTGCACATGTCGGACCCCAACTTTGGCAAGCTCACCTCCCTCCACTTCTACGCCT 174998 Query 55884 GGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGCC 55936 |||||||||| || |||||||| |||||||| ||||| ||||||||| |||| Sbjct 174997 GGAAGAAGGGGCTGAAGACGGGGATGTACTACCTGCGCACCCGCGCCGCGGCC 174945 >seq99 Length=333813 Score = 96.9 bits (106), Expect = 4e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || || |||||||||| ||| |||||| |||||||| || |||| Sbjct 93348 AGCCCCGGCATGAGCCCCCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAG 93289 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC 74924 || ||||| || || || ||||||||||| ||||| | ||||| | | || | Sbjct 93288 AATATGCCCTCCACGCAGGCAAAGGCGACCAGGCGCTCGGCGAATCGCTCTGCGCTCGAG 93229 Query 74925 ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGG 74984 ||||| || | ||||| || || || |||||| | || || || ||| | || ||| Sbjct 93228 ATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGACCACTGGTACCGTCTCGGTGGCGTGG 93169 Query 74985 AAGAGGCTTGCCTTCT-CTTCGGGATCCTTGA 75015 || || | |||||| | |||| ||||||| Sbjct 93168 AACAGCATGTCCTTCTGCCGCGGG-TCCTTGA 93138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213441765200