Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq43 206 3e-48
seq99 96.9 4e-15
>seq43
Length=247289
Score = 206 bits (228), Expect = 3e-48
Identities = 247/333 (74%), Gaps = 2/333 (1%)
Strand=Plus/Minus
Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332
|| || |||||| |||| || ||||||||||| || || | ||| ||| |||| |
Sbjct 177833 TTCACTCACGCCTCGCCCACGCTGTTCAACGCCGGCACCCCCCGCCCCCAGCTGTCCTCC 177774
Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392
|||||||| ||| | ||||||| ||| ||||| ||||||||||| ||||| ||||||
Sbjct 177773 TGCTTCCTAGTGTCCATGAAGGCCGACAGCATCGAGGGCATCTACGACACGCTGAAGGAG 177714
Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGC 53451
|| || |||||| |||| |||| || ||||| | | ||| | ||| |||||||
Sbjct 177713 TGCGCGGCCATCTCTAAGTCCGCGGGCGGCATCGGCCTGAGCATGCAC-AACATCCGTGC 177655
Query 53452 GAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCG 53511
| || | ||| || || |||||| | | | || |||||||| ||||| ||
Sbjct 177654 CACGGGGTCCTACATCCGCGGCACCAACGGCTCCAGCAACGGCATCGTGCCCATGCTGCG 177595
Query 53512 CGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTT 53571
|||||||||| |||| || || ||||| ||||||| || || ||||||||||| | ||
Sbjct 177594 CGTCTTCAACGACACCGCGCGCTACGTGGACCAGGGAGGCGGCAAGCGCAAGGGCGCCTT 177535
Query 53572 CGCCATCTACCTCGAGCCGTGGCACGCCGACAT 53604
||||| ||||||||||| ||||| ||||||||
Sbjct 177534 TGCCATGTACCTCGAGCCCTGGCATGCCGACAT 177502
Score = 159 bits (176), Expect = 4e-34
Identities = 288/413 (70%), Gaps = 10/413 (2%)
Strand=Plus/Minus
Query 55529 CAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGG 55588
|||||| |||||||||||||| |||||||||||||||| |||||||||| |||||||
Sbjct 175352 CAGATCCTGGGCAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTACGTGCGCCGC 175293
Query 55589 ACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGA-T 55647
|| | || ||||| || | ||| ||||||| | | ||||| || | |
Sbjct 175292 GTGCTGTCCGGCGAGTTCACGGTGGTGAACCAGCACCTGCTGCACGACCT-CACCCGCCT 175234
Query 55648 CAACAAGTGGAACCCGCAGATCAAGACGGATATTGTG-CGG--AACGGGGGGTCCGTCCA 55704
| |||| || | || |||| || | ||| ||| |||||| || || ||
Sbjct 175233 GGGCCTGTGGGACGGCGACATGAAGAACGAGCTGGTGGCGGGCAACGGG---TCGGTGCA 175177
Query 55705 GAATCTGGAGATTCCTCT-GCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCAC 55763
| ||||| || || ||| ||||||| | | ||| ||||||||||||||| |
Sbjct 175176 GGGCCTGGACATCCCCGACGCG-CTCAAGGCGCTGTACAAGACGGTGTGGGAGATCAAGC 175118
Query 55764 AGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTC 55823
|| | ||| | |||||| || ||||| || ||||||||||| |||||||||||
Sbjct 175117 AGCGCACGCTGGTGGACATGGCCGCGGATCGCGGCGCGTACATCGATCAGTCCCAGTCCT 175058
Query 55824 TGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGT 55883
| ||| | |||| | | || | | |||| | | ||| | ||||| |||| |
Sbjct 175057 TCAACGTGCACATGTCGGACCCCAACTTTGGCAAGCTCACCTCCCTCCACTTCTACGCCT 174998
Query 55884 GGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGCC 55936
|||||||||| || |||||||| |||||||| ||||| ||||||||| ||||
Sbjct 174997 GGAAGAAGGGGCTGAAGACGGGGATGTACTACCTGCGCACCCGCGCCGCGGCC 174945
>seq99
Length=333813
Score = 96.9 bits (106), Expect = 4e-15
Identities = 150/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864
|| || ||||| || || |||||||||| ||| |||||| |||||||| || ||||
Sbjct 93348 AGCCCCGGCATGAGCCCCCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAG 93289
Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC 74924
|| ||||| || || || ||||||||||| ||||| | ||||| | | || |
Sbjct 93288 AATATGCCCTCCACGCAGGCAAAGGCGACCAGGCGCTCGGCGAATCGCTCTGCGCTCGAG 93229
Query 74925 ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGG 74984
||||| || | ||||| || || || |||||| | || || || ||| | || |||
Sbjct 93228 ATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGACCACTGGTACCGTCTCGGTGGCGTGG 93169
Query 74985 AAGAGGCTTGCCTTCT-CTTCGGGATCCTTGA 75015
|| || | |||||| | |||| |||||||
Sbjct 93168 AACAGCATGTCCTTCTGCCGCGGG-TCCTTGA 93138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547213441765200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |