Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq133 179 4e-40 seq149 125 8e-24 seq43 104 3e-17 seq203 82.4 9e-11 >seq133 Length=726431 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| || |||||||| ||||| || || || ||||| Sbjct 170917 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCC 170858 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || |||||||||||||| || ||||| |||||| Sbjct 170857 GACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 170798 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| |||||||| | || ||||| | ||||| || Sbjct 170797 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 170738 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 170737 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGCGGCGG 170691 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 ||||||| || || |||||||||||||| || || || ||||| ||||| || || |||| Sbjct 171069 TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAACAGCGCCTGATCTTTG 171010 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 | || ||||| |||||||| | || ||||| | ||||| || |||| ||||| |||| Sbjct 171009 CCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCA 170950 Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || |||| || ||||| || Sbjct 170949 CCCTGCACCTGGTGCTGCGCCTGCGCGGCGG 170919 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 146788 ACCACCTACTACCAGATGCAGACGCGCAGCGCCGACGAGCCGATGACGGCGTTCATCACC 146847 || || ||||||||||||||||| || ||||| |||||||||||||| | ||| ||||| Sbjct 58508 ACGACGTACTACCAGATGCAGACCCGGAGCGCGGACGAGCCGATGACCACCTTCGTCACC 58449 Query 146848 TGCCTGAATTGCTCTAACCGCTGGAAGTGCT 146878 ||||| || ||| ||||| ||||||| || Sbjct 58448 TGCCTCAACTGCAACAACCGGTGGAAGTTCT 58418 >seq149 Length=203194 Score = 125 bits (138), Expect = 8e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 ||||||| || |||||||| ||||||||||| || || ||||| ||||| || || |||| Sbjct 6999 TGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCGGACCAACAGCGCCTGATCTTTG 6940 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 | || ||||| || ||||||| || ||||| | ||||| || |||| ||||| |||| Sbjct 6939 CGGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCA 6880 Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || || || ||| |||| || || |||||| Sbjct 6879 CCCTCCACCTGGTCCTGCGCCTGCGTGGTGGA 6848 >seq43 Length=247289 Score = 104 bits (114), Expect = 3e-17 Identities = 232/343 (68%), Gaps = 9/343 (3%) Strand=Plus/Plus Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGA---C 81376 |||| | |||||| |||||||| ||||| || |||| ||| | | |||||||| | Sbjct 177494 AGTCGAAGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGC 177553 Query 81377 GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATAC 81436 ||| ||||||| ||||| || || || |||| || || |||| ||| || | ||| | Sbjct 177554 CGCCTCCCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGC 177613 Query 81437 CATCTGACTGA-CCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATT 81495 | | || || ||||| || || ||| |||||| |||| || | ||| || Sbjct 177614 CGT-TGCTGGAGCCGTTGGTGCCGCGGATGTAGGACCCCGTGGCACGGATGTTGTGCATG 177672 Query 81496 GAAAGACCGATGCCACCTGACCACTTTGAAAT--CTGAGCACACCGGTTCATGGTCTCAT 81553 || |||||||| || | |||| || || | | |||| || |||| || || | Sbjct 177673 CTCAGGCCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCC--TTCAGCGTGTCGT 177730 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGC 81613 | || ||||||||||| || |||||| | | ||| ||| |||| ||| |||| Sbjct 177731 AGATGCCCTCGATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGC 177790 Query 81614 TTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAA 81656 | |||||| |||||||| || || | |||||| |||| Sbjct 177791 GGGGGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGAGTGAA 177833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 || || || ||||| |||||||| |||||||| || |||||||||||| |||| | ||| Sbjct 174952 GCGCGGGTGCGCAGGTAGTACATCCCCGTCTTCAGCCCCTTCTTCCAGGCGTAGAAGTGG 175011 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 | || ||||||| ||| |||||| | |||| | ||| | ||||| |||||| Sbjct 175012 AGGGAGGTGAGCTTGCCAAAGTTGGGGTCCGACATGTGCACGTTGAAGGACTGGGACTGA 175071 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTC 80183 |||| | || || ||||| || ||||| || Sbjct 175072 TCGATGTACGCGCCGCGATCCGCGGCCATGTC 175103 >seq203 Length=214014 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113 ||||||| || || |||||||||| || ||||| ||||||| |||||||| ||||| | Sbjct 135795 AGGTGGCCCAACTCGCGGGCTACGTCGCCGAGCACTCGGCCTACCACCACGGAGAGGCCT 135736 Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173 | | ||||||||||| || ||| || ||| | || |||| | || ||| | ||| Sbjct 135735 CATTGCAGGGCACCATCGTGGGCCTGGCCCAGGATTTCATCGGCTCCAACAACATCAACC 135676 Query 32174 TACTCGAGCC 32183 | || | ||| Sbjct 135675 TGCTTGTGCC 135666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307733798880