Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq133 179 4e-40
seq149 125 8e-24
seq43 104 3e-17
seq203 82.4 9e-11
>seq133
Length=726431
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||||| || |||||||| ||||| || || || |||||
Sbjct 170917 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCC 170858
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| ||||||| || || |||||||||||||| || ||||| ||||||
Sbjct 170857 GACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 170798
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || ||||| || ||||| |||||||| | || ||||| | ||||| ||
Sbjct 170797 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 170738
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || || |||| || ||||| ||
Sbjct 170737 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGCGGCGG 170691
Score = 114 bits (126), Expect = 1e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541
||||||| || || |||||||||||||| || || || ||||| ||||| || || ||||
Sbjct 171069 TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAACAGCGCCTGATCTTTG 171010
Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601
| || ||||| |||||||| | || ||||| | ||||| || |||| ||||| ||||
Sbjct 171009 CCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCA 170950
Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || || || || |||| || ||||| ||
Sbjct 170949 CCCTGCACCTGGTGCTGCGCCTGCGCGGCGG 170919
Score = 93.3 bits (102), Expect = 5e-14
Identities = 75/91 (82%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 146788 ACCACCTACTACCAGATGCAGACGCGCAGCGCCGACGAGCCGATGACGGCGTTCATCACC 146847
|| || ||||||||||||||||| || ||||| |||||||||||||| | ||| |||||
Sbjct 58508 ACGACGTACTACCAGATGCAGACCCGGAGCGCGGACGAGCCGATGACCACCTTCGTCACC 58449
Query 146848 TGCCTGAATTGCTCTAACCGCTGGAAGTGCT 146878
||||| || ||| ||||| ||||||| ||
Sbjct 58448 TGCCTCAACTGCAACAACCGGTGGAAGTTCT 58418
>seq149
Length=203194
Score = 125 bits (138), Expect = 8e-24
Identities = 119/152 (78%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541
||||||| || |||||||| ||||||||||| || || ||||| ||||| || || ||||
Sbjct 6999 TGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCGGACCAACAGCGCCTGATCTTTG 6940
Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601
| || ||||| || ||||||| || ||||| | ||||| || |||| ||||| ||||
Sbjct 6939 CGGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCA 6880
Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| || || || ||| |||| || || ||||||
Sbjct 6879 CCCTCCACCTGGTCCTGCGCCTGCGTGGTGGA 6848
>seq43
Length=247289
Score = 104 bits (114), Expect = 3e-17
Identities = 232/343 (68%), Gaps = 9/343 (3%)
Strand=Plus/Plus
Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGA---C 81376
|||| | |||||| |||||||| ||||| || |||| ||| | | |||||||| |
Sbjct 177494 AGTCGAAGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGC 177553
Query 81377 GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATAC 81436
||| ||||||| ||||| || || || |||| || || |||| ||| || | ||| |
Sbjct 177554 CGCCTCCCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGC 177613
Query 81437 CATCTGACTGA-CCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATT 81495
| | || || ||||| || || ||| |||||| |||| || | ||| ||
Sbjct 177614 CGT-TGCTGGAGCCGTTGGTGCCGCGGATGTAGGACCCCGTGGCACGGATGTTGTGCATG 177672
Query 81496 GAAAGACCGATGCCACCTGACCACTTTGAAAT--CTGAGCACACCGGTTCATGGTCTCAT 81553
|| |||||||| || | |||| || || | | |||| || |||| || || |
Sbjct 177673 CTCAGGCCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCC--TTCAGCGTGTCGT 177730
Query 81554 AAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGC 81613
| || ||||||||||| || |||||| | | ||| ||| |||| ||| ||||
Sbjct 177731 AGATGCCCTCGATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGC 177790
Query 81614 TTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAA 81656
| |||||| |||||||| || || | |||||| ||||
Sbjct 177791 GGGGGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGAGTGAA 177833
Score = 95.1 bits (104), Expect = 1e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
|| || || ||||| |||||||| |||||||| || |||||||||||| |||| | |||
Sbjct 174952 GCGCGGGTGCGCAGGTAGTACATCCCCGTCTTCAGCCCCTTCTTCCAGGCGTAGAAGTGG 175011
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
| || ||||||| ||| |||||| | |||| | ||| | ||||| ||||||
Sbjct 175012 AGGGAGGTGAGCTTGCCAAAGTTGGGGTCCGACATGTGCACGTTGAAGGACTGGGACTGA 175071
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTC 80183
|||| | || || ||||| || ||||| ||
Sbjct 175072 TCGATGTACGCGCCGCGATCCGCGGCCATGTC 175103
>seq203
Length=214014
Score = 82.4 bits (90), Expect = 9e-11
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113
||||||| || || |||||||||| || ||||| ||||||| |||||||| ||||| |
Sbjct 135795 AGGTGGCCCAACTCGCGGGCTACGTCGCCGAGCACTCGGCCTACCACCACGGAGAGGCCT 135736
Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173
| | ||||||||||| || ||| || ||| | || |||| | || ||| | |||
Sbjct 135735 CATTGCAGGGCACCATCGTGGGCCTGGCCCAGGATTTCATCGGCTCCAACAACATCAACC 135676
Query 32174 TACTCGAGCC 32183
| || | |||
Sbjct 135675 TGCTTGTGCC 135666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570307733798880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |