Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq88 91.5 1e-13
seq133 86.0 5e-12
seq43 86.0 5e-12
>seq88
Length=544131
Score = 91.5 bits (100), Expect = 1e-13
Identities = 132/181 (73%), Gaps = 4/181 (2%)
Strand=Plus/Minus
Query 52731 GTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGTTC 52790
||||||||| | || || | | ||| ||| ||| ||||||||||||| | || |
Sbjct 449466 GTCAAGGTGCTGGTGCGGCACACACGGCGCCCCGAGCTGGGCGACAAGTTCTCCTCTCGC 449407
Query 52791 -ACGGCGCAAAAGGG-GACGTGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGACA 52848
||||| || ||||| | || || || || || || ||| ||| | |||||| |
Sbjct 449406 CACGGC-CAGAAGGGCGTGGTTGGGTGCA-TCGTGCCCGAGGCCGACCTCCCCTTCTCCG 449349
Query 52849 AGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGACCG 52908
|| |||||||||||||||||| ||||| ||||| |||| ||| |||||| | ||||| |
Sbjct 449348 AGCGCGGGGTGGTGCCCGACCTGATCATGAACCCGCACGGCTTCCCCTCCCGCATGACTG 449289
Query 52909 T 52909
|
Sbjct 449288 T 449288
>seq133
Length=726431
Score = 86.0 bits (94), Expect = 5e-12
Identities = 110/149 (74%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 30200 CCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGG 30259
|||| ||||| |||||| || |||| | | ||| | || || || || | |||||||
Sbjct 23491 CCCA-CCCCG-GTAGTCGGCGTGCATGCCGGCGTAGGCCGCGCCAAAGTGGCGCCACTGG 23548
Query 30260 AACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAA 30319
|| ||||||||||| |||||||| ||||| || | ||| | | ||| | | |||||
Sbjct 23549 AAGCCGTACACCGGACCCAGGTCGCCCTCCTCGCGGTGTCCCAGGCCGCGCGCGTCCAGG 23608
Query 30320 AAGTCTCTGGAACCGTTGGCGTCCCAGAT 30348
|| || | || |||||| ||||||||||
Sbjct 23609 AACTCGCGCGACCCGTTGCCGTCCCAGAT 23637
>seq43
Length=247289
Score = 86.0 bits (94), Expect = 5e-12
Identities = 104/139 (75%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 52770 GGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGGGACGTGCGGAGCCGTCCTGACCCA 52828
|||||||| ||||| ||| ||||| ||| ||||| || ||| | | |||||
Sbjct 47883 GGCGACAAATTTGCTTCGCGGCACGG-GCAGAAGGGCACCATCGGCATCACCTACACCCA 47825
Query 52829 GGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGC 52888
|||||||||||||||| | ||| || | ||||||||||| ||||||||||| |||||
Sbjct 47824 GGAGGACATGCCCTTCACCGCGGAGGGCATCGTGCCCGACCTGATCATCAACCCGCACGC 47765
Query 52889 CTTTCCCTCCAGGATGACC 52907
| | || || | ||||||
Sbjct 47764 CATCCCGTCGCGCATGACC 47746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406308547986408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |