Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq88 91.5 1e-13 seq133 86.0 5e-12 seq43 86.0 5e-12 >seq88 Length=544131 Score = 91.5 bits (100), Expect = 1e-13 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 52731 GTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGTTC 52790 ||||||||| | || || | | ||| ||| ||| ||||||||||||| | || | Sbjct 449466 GTCAAGGTGCTGGTGCGGCACACACGGCGCCCCGAGCTGGGCGACAAGTTCTCCTCTCGC 449407 Query 52791 -ACGGCGCAAAAGGG-GACGTGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGACA 52848 ||||| || ||||| | || || || || || || ||| ||| | |||||| | Sbjct 449406 CACGGC-CAGAAGGGCGTGGTTGGGTGCA-TCGTGCCCGAGGCCGACCTCCCCTTCTCCG 449349 Query 52849 AGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGACCG 52908 || |||||||||||||||||| ||||| ||||| |||| ||| |||||| | ||||| | Sbjct 449348 AGCGCGGGGTGGTGCCCGACCTGATCATGAACCCGCACGGCTTCCCCTCCCGCATGACTG 449289 Query 52909 T 52909 | Sbjct 449288 T 449288 >seq133 Length=726431 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 30200 CCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGG 30259 |||| ||||| |||||| || |||| | | ||| | || || || || | ||||||| Sbjct 23491 CCCA-CCCCG-GTAGTCGGCGTGCATGCCGGCGTAGGCCGCGCCAAAGTGGCGCCACTGG 23548 Query 30260 AACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAA 30319 || ||||||||||| |||||||| ||||| || | ||| | | ||| | | ||||| Sbjct 23549 AAGCCGTACACCGGACCCAGGTCGCCCTCCTCGCGGTGTCCCAGGCCGCGCGCGTCCAGG 23608 Query 30320 AAGTCTCTGGAACCGTTGGCGTCCCAGAT 30348 || || | || |||||| |||||||||| Sbjct 23609 AACTCGCGCGACCCGTTGCCGTCCCAGAT 23637 >seq43 Length=247289 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 52770 GGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGGGACGTGCGGAGCCGTCCTGACCCA 52828 |||||||| ||||| ||| ||||| ||| ||||| || ||| | | ||||| Sbjct 47883 GGCGACAAATTTGCTTCGCGGCACGG-GCAGAAGGGCACCATCGGCATCACCTACACCCA 47825 Query 52829 GGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGC 52888 |||||||||||||||| | ||| || | ||||||||||| ||||||||||| ||||| Sbjct 47824 GGAGGACATGCCCTTCACCGCGGAGGGCATCGTGCCCGACCTGATCATCAACCCGCACGC 47765 Query 52889 CTTTCCCTCCAGGATGACC 52907 | | || || | |||||| Sbjct 47764 CATCCCGTCGCGCATGACC 47746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308547986408