Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq243 650 0.0 >seq243 Length=18593 Score = 650 bits (720), Expect = 0.0 Identities = 733/981 (75%), Gaps = 8/981 (1%) Strand=Plus/Minus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 ||||| ||||||| || | || | ||| | | || ||||||||||||||||| || Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTTATCGTTGCATTTATTGCAGCACCA 176232 ||||| || | | || || | | |||||| | || ||||| || || || Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCCG 3727 Query 176233 CCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAAC 176292 || || ||||| || |||||||||||||||||| |||| || |||| |||||||| ||| Sbjct 3726 CCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAAC 3667 Query 176293 ATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAATC 176352 || || || || || || || |||| ||||||||||| || |||| || ||||||||| Sbjct 3666 ATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAATC 3607 Query 176353 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTA 176412 |||||||| || | ||||||||||| | || ||||| ||||| |||||||| | ||| Sbjct 3606 TGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGTA 3547 Query 176413 TTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGA 176472 | ||||| | | || || | | |||||||| || |||||||| | || | | Sbjct 3546 TGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCGT 3487 Query 176473 CTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCA 176532 |||| |||||||| |||||| ||||| || || ||||| || ||||||| | || Sbjct 3486 TTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCT 3427 Query 176533 GTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATT 176592 || ||| | | |||||| | || ||||| || ||||||||||||||||| | || ||| Sbjct 3426 GTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTATT 3367 Query 176593 TCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCA 176652 || ||||| ||||| |||||| | |||||||||||||| || |||||| ||||||||||| Sbjct 3366 TCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCCA 3307 Query 176653 TTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGA 176712 |||||||||||||| || || ||||| |||||||| || | || || |||||||| || Sbjct 3306 TTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGGT 3247 Query 176713 AGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGT 176772 | || |||||||| | || | || ||||| ||||||||||| ||| ||| Sbjct 3246 TCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGGT 3187 Query 176773 TACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGT 176832 ||||||||||||||| ||||||| || |||||||| |||||||| || || || || ||| Sbjct 3186 TACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGGT 3127 Query 176833 CGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCA 176892 ||| | || ||||| || || ||||| |||||||| | | | ||||||||| | || Sbjct 3126 CGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGCT 3067 Query 176893 GCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAAC 176952 || | ||||||||| | || ||||||||||| | ||| ||| || |||||||| ||| Sbjct 3066 GCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAAC 3007 Query 176953 CTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG----ACAACTCTGGTAAAGTGATTCC 177008 | || ||||||||||| ||||| || || | | |||| ||| || ||| Sbjct 3006 TTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAA----GGTCGTGTTATTAA 2951 Query 177009 TACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAA 177068 || |||| ||||| |||||||||| || |||||||||||||||||||| || ||||| Sbjct 2950 CACTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 2891 Query 177069 TGCTCACAACTTCCCACTTGA 177089 ||| ||||| |||||||| || Sbjct 2890 TGCACACAATTTCCCACTAGA 2870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603491578663680