Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq133 98.7 9e-16 >seq133 Length=726431 Score = 98.7 bits (108), Expect = 9e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 6903 CCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAG 6962 |||| |||||||| | ||||||||| ||||| ||||| |||| |||||||||||| || Sbjct 23526 CCGCGCCAAAGTGGCGCCACTGGAAGCCGTACACCGGACCCAGGTCGCCCTCCTCGCGGT 23585 Query 6963 ATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCC 7022 | | || ||| |||||| || || || ||||||| |||||||||| | ||| | Sbjct 23586 GTCCCAGGCCGCGCGCGTCCAGGAACTCGCGCGACCCGTTGCCGTCCCAGATGTGCACGC 23645 Query 7023 CCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGA 7082 | ||| | ||| | ||| || || || || ||||| ||||||||||| Sbjct 23646 CGCGGTCGGCCAGCAGGCGCGCGTTGGTCGCGCCGGAGACAAACCAGAGCAGCTCCTCAG 23705 Query 7083 CCACGCC 7089 ||||||| Sbjct 23706 CCACGCC 23712 Score = 98.7 bits (108), Expect = 9e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 34256 GGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCG 34315 ||||||| ||||||||||| ||||| || || || || ||| | ||| | Sbjct 23712 GGCGTGGCTGAGGAGCTGCTCTGGTTTGTCTCCGGCGCGACCAACGCGCGCCTGCTGGCC 23653 Query 34316 TCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG 34375 ||| || ||| | |||||||||| ||||||| || || || |||||| ||| || Sbjct 23652 GACCGCGGCGTGCACATCTGGGACGGCAACGGGTCGCGCGAGTTCCTGGACGCGCGCGGC 23593 Query 34376 TTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTT 34435 | | || |||||||||||| |||| ||||| ||||| ||||||||| | |||||| Sbjct 23592 CTGGGACACCGCGAGGAGGGCGACCTGGGTCCGGTGTACGGCTTCCAGTGGCGCCACTTT 23533 Query 34436 GGGGCGG 34442 || |||| Sbjct 23532 GGCGCGG 23526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260304373280