Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq133 158 3e-33 seq149 123 6e-23 >seq133 Length=726431 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | ||||| | || || Sbjct 170706 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 170765 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || ||||| ||||| | || ||||||||| Sbjct 170766 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 170825 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || |||||||| ||| || || ||||| || || ||| Sbjct 170826 TGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCACTTCGAGCGTAATGGTC 170885 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 170886 TTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 170917 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | ||||| | || || Sbjct 170934 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 170993 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| |||||||| || || | || ||||||||| Sbjct 170994 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCC 171053 Query 211023 TGGATCTTTTGTTTCACGTTTTC 211045 |||||||| |||||||| || Sbjct 171054 TGGATCTTGGCCTTCACGTTGTC 171076 >seq149 Length=203194 Score = 123 bits (136), Expect = 6e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | ||||| Sbjct 6864 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 6923 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| |||||||| || || | ||| ||||| ||| Sbjct 6924 TCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCCGGGGGGATTCCCTCCTTATCC 6983 Query 211023 TGGATCTTTTGTTTCACGTTTTC 211045 || ||||| |||||||| || Sbjct 6984 TGAATCTTGGCCTTCACGTTGTC 7006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159146445488510