Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq133 141 2e-28
seq336 132 1e-25
seq260 86.0 1e-11
>seq133
Length=726431
Score = 141 bits (156), Expect = 2e-28
Identities = 164/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || ||||| || ||||| || || |||| ||||| |||| || ||
Sbjct 170697 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 170756
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || |||||||| || || ||||| || || || |||||||| || || ||
Sbjct 170757 CGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCC 170816
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| |||||||| ||||||| || |||||||| |||| ||||| || | |
Sbjct 170817 TCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCACTTCGAGC 170876
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || ||||||||||||| || || | ||| | |||||
Sbjct 170877 GTAATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 170917
>seq336
Length=57273
Score = 132 bits (146), Expect = 1e-25
Identities = 199/283 (70%), Gaps = 0/283 (0%)
Strand=Plus/Minus
Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504
||||| | |||||||||| ||||||||| | |||| || ||||||| | || |||
Sbjct 8711 TATATCTTATATTTGGTGCATTTTCTGGTGTATTAGGAACAGTATTTTCATTAATAATAC 8652
Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564
| | |||||||| || ||| ||||||||| | || ||| ||| | || || |
Sbjct 8651 GTATGGAATTAGCACAACCTGGTAATCAAATATTAAACGGAAATCATCAATTATATAATG 8592
Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAG 7624
| |||||||| || || || ||| | |||||||||||| | | ||||| | | | |
Sbjct 8591 TAATTATTACAGCACACGCATTTTTAATGATTTTCTTTATGTTGATGCCAGCATTACTTG 8532
Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684
| || || || ||||| || |||||| | | || || || || |||||||| |||||
Sbjct 8531 GAGGATTTGGTAATTGGTTTGTTCCTATTTTAATAGGGGCACCAGATATGGCATTTCCTC 8472
Query 7685 GGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727
| | || ||||| ||||| ||| |||| || || |||||
Sbjct 8471 GTTTAAATAATATTTCATTTTGGTTATTACCACCATCATTATT 8429
Score = 118 bits (130), Expect = 3e-21
Identities = 89/105 (85%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| |||||||||||||||||||| ||||| || ||||| |||||||||||||| || ||
Sbjct 23297 GAAGATTTGACCATCAGTAATAGAAATAACGTTAGTAGGAATATAAGCAGAAACGTCTCC 23356
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574
||||||||||| | ||| || | ||||||| ||| ||||||||
Sbjct 23357 AGCTTGTGTTTCAATAACTGGAAGTGCTGTTAATGAGCCACCACC 23401
Score = 105 bits (116), Expect = 2e-17
Identities = 84/100 (84%), Gaps = 1/100 (1%)
Strand=Plus/Plus
Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAGGGCAG 6825
||||||||||||||||||||||||||||||| | ||||||||| | | || | |||
Sbjct 49833 TTGAGAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAATACTTTAGAGTAACAG 49892
Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865
|||||| ||||||| ||||||||||| |||| ||||| ||
Sbjct 49893 CAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAG 49932
Score = 100 bits (110), Expect = 7e-16
Identities = 76/90 (84%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 370681 ACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAA 370740
||| ||||| |||||||| ||||| || | ||||||||| || || |||| |||||||||
Sbjct 5575 ACCGAAAAACCAGAATAAGTGTTGGTATAAGATAGGATCTCCACCTCCTGCTGGATCAAA 5634
Query 370741 AAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
|| ||||||||||||||||| || |||||
Sbjct 5635 GAAACTAGTATTAAAATTTCTGTCTGTTAA 5664
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424
||||| | | |||||||||||||||||||| | | ||||||||||| ||| |||||||
Sbjct 5744 AATGGAAGTCTATGCATAGATAAACCAGGTGCACGCATATTAAATACAGTACAAATAAAG 5803
Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484
|| ||||| |||| || | | | ||| || | ||||||||| || || ||||| ||
Sbjct 5804 TTAATAGCACCTAAAATACTACTAACACCAGCTAAATGTAAACTGAAAATAGCTAAGTCA 5863
Query 371485 ACGGAACCGCCGGAGTG 371501
|| ||| || |||||
Sbjct 5864 ACACTACCACCAGAGTG 5880
Score = 89.7 bits (98), Expect = 1e-12
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 372624 GGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGT 372683
|||| ||| ||||| | ||| |||||||||| |||||||||||||||| || ||| ||
Sbjct 1602 GGTGGCACAAAATAGGGAGTAACGACTGTTTAATAAAAACACAGGACTCTGCAAAGCGGT 1543
Query 372684 AAAACGATGTATAGGGTCTGACAC 372707
|| ||| ||||||||||||||||
Sbjct 1542 AACGCGACGTATAGGGTCTGACAC 1519
>seq260
Length=66046
Score = 86.0 bits (94), Expect = 1e-11
Identities = 89/113 (79%), Gaps = 3/113 (3%)
Strand=Plus/Plus
Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825
|||||| ||||||||||||| ||||||||| | |||||||| | || ||| | |||||
Sbjct 22870 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 22928
Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878
||||| |||| || |||||||||||||| ||| ||| |||| |||||
Sbjct 22929 CAGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGA 22981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192525485539556
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |