Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq133 141 2e-28 seq336 132 1e-25 seq260 86.0 1e-11 >seq133 Length=726431 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || ||||| || || |||| ||||| |||| || || Sbjct 170697 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 170756 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || || ||||| || || || |||||||| || || || Sbjct 170757 CGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCC 170816 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||||||| || |||||||| |||| ||||| || | | Sbjct 170817 TCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCACTTCGAGC 170876 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||||||||||| || || | ||| | ||||| Sbjct 170877 GTAATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 170917 >seq336 Length=57273 Score = 132 bits (146), Expect = 1e-25 Identities = 199/283 (70%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504 ||||| | |||||||||| ||||||||| | |||| || ||||||| | || ||| Sbjct 8711 TATATCTTATATTTGGTGCATTTTCTGGTGTATTAGGAACAGTATTTTCATTAATAATAC 8652 Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564 | | |||||||| || ||| ||||||||| | || ||| ||| | || || | Sbjct 8651 GTATGGAATTAGCACAACCTGGTAATCAAATATTAAACGGAAATCATCAATTATATAATG 8592 Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAG 7624 | |||||||| || || || ||| | |||||||||||| | | ||||| | | | | Sbjct 8591 TAATTATTACAGCACACGCATTTTTAATGATTTTCTTTATGTTGATGCCAGCATTACTTG 8532 Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684 | || || || ||||| || |||||| | | || || || || |||||||| ||||| Sbjct 8531 GAGGATTTGGTAATTGGTTTGTTCCTATTTTAATAGGGGCACCAGATATGGCATTTCCTC 8472 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | | || ||||| ||||| ||| |||| || || ||||| Sbjct 8471 GTTTAAATAATATTTCATTTTGGTTATTACCACCATCATTATT 8429 Score = 118 bits (130), Expect = 3e-21 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||||||||| ||||| || ||||| |||||||||||||| || || Sbjct 23297 GAAGATTTGACCATCAGTAATAGAAATAACGTTAGTAGGAATATAAGCAGAAACGTCTCC 23356 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||||||||| | ||| || | ||||||| ||| |||||||| Sbjct 23357 AGCTTGTGTTTCAATAACTGGAAGTGCTGTTAATGAGCCACCACC 23401 Score = 105 bits (116), Expect = 2e-17 Identities = 84/100 (84%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAGGGCAG 6825 ||||||||||||||||||||||||||||||| | ||||||||| | | || | ||| Sbjct 49833 TTGAGAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAATACTTTAGAGTAACAG 49892 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| ||||||||||| |||| ||||| || Sbjct 49893 CAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAG 49932 Score = 100 bits (110), Expect = 7e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 370681 ACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAA 370740 ||| ||||| |||||||| ||||| || | ||||||||| || || |||| ||||||||| Sbjct 5575 ACCGAAAAACCAGAATAAGTGTTGGTATAAGATAGGATCTCCACCTCCTGCTGGATCAAA 5634 Query 370741 AAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || ||||||||||||||||| || ||||| Sbjct 5635 GAAACTAGTATTAAAATTTCTGTCTGTTAA 5664 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 ||||| | | |||||||||||||||||||| | | ||||||||||| ||| ||||||| Sbjct 5744 AATGGAAGTCTATGCATAGATAAACCAGGTGCACGCATATTAAATACAGTACAAATAAAG 5803 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| || | | | ||| || | ||||||||| || || ||||| || Sbjct 5804 TTAATAGCACCTAAAATACTACTAACACCAGCTAAATGTAAACTGAAAATAGCTAAGTCA 5863 Query 371485 ACGGAACCGCCGGAGTG 371501 || ||| || ||||| Sbjct 5864 ACACTACCACCAGAGTG 5880 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 372624 GGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGT 372683 |||| ||| ||||| | ||| |||||||||| |||||||||||||||| || ||| || Sbjct 1602 GGTGGCACAAAATAGGGAGTAACGACTGTTTAATAAAAACACAGGACTCTGCAAAGCGGT 1543 Query 372684 AAAACGATGTATAGGGTCTGACAC 372707 || ||| |||||||||||||||| Sbjct 1542 AACGCGACGTATAGGGTCTGACAC 1519 >seq260 Length=66046 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/113 (79%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 22870 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 22928 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 ||||| |||| || |||||||||||||| ||| ||| |||| ||||| Sbjct 22929 CAGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGA 22981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192525485539556