Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq133 89.7 4e-13 seq88 87.8 1e-12 >seq133 Length=726431 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 29723 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGC 29782 || || |||| |||| | |||||||| | |||| |||||||| ||||||||||| || Sbjct 21992 ACCTGCGCCAGCATGCAGGTGAGGAGGGCGTAGGATGCGATGTTGAAGGGCACCCCCAGG 22051 Query 29783 CCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAAC 29842 || | ||| | || | |||||| | ||||||||| ||||| ||||| |||| | ||| Sbjct 22052 CCGAGGTCGGCGGAGCGCTGGTACATCTGGCACGACAGCTCGCCGTCTGCCACGAAGAAC 22111 Query 29843 TG 29844 || Sbjct 22112 TG 22113 >seq88 Length=544131 Score = 87.8 bits (96), Expect = 1e-12 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 53495 GTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCATC-CTT 53553 ||||||||| | || || | | ||| ||| ||| ||||||||||||| | || | Sbjct 449466 GTCAAGGTGCTGGTGCGGCACACACGGCGCCCCGAGCTGGGCGACAAGTTCTCCTCTCGC 449407 Query 53554 CACGGCGCAAAAGGG-GACATGCGGAGCGGTCCTGACTCAGGAGGACATGCCCTTCGACA 53612 |||||| || ||||| | | || || || || | ||| ||| | |||||| | Sbjct 449406 CACGGC-CAGAAGGGCGTGGTTGGGTGCA-TCGTGCCCGAGGCCGACCTCCCCTTCTCCG 449349 Query 53613 AGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGACGG 53672 || |||||||||||||||||| ||||| ||||| |||| ||| |||||| | ||||| | Sbjct 449348 AGCGCGGGGTGGTGCCCGACCTGATCATGAACCCGCACGGCTTCCCCTCCCGCATGACTG 449289 Query 53673 T 53673 | Sbjct 449288 T 449288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406161348657364