Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq133 89.7 4e-13
seq88 87.8 1e-12
>seq133
Length=726431
Score = 89.7 bits (98), Expect = 4e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 29723 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGC 29782
|| || |||| |||| | |||||||| | |||| |||||||| ||||||||||| ||
Sbjct 21992 ACCTGCGCCAGCATGCAGGTGAGGAGGGCGTAGGATGCGATGTTGAAGGGCACCCCCAGG 22051
Query 29783 CCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAAC 29842
|| | ||| | || | |||||| | ||||||||| ||||| ||||| |||| | |||
Sbjct 22052 CCGAGGTCGGCGGAGCGCTGGTACATCTGGCACGACAGCTCGCCGTCTGCCACGAAGAAC 22111
Query 29843 TG 29844
||
Sbjct 22112 TG 22113
>seq88
Length=544131
Score = 87.8 bits (96), Expect = 1e-12
Identities = 131/181 (72%), Gaps = 4/181 (2%)
Strand=Plus/Minus
Query 53495 GTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCATC-CTT 53553
||||||||| | || || | | ||| ||| ||| ||||||||||||| | || |
Sbjct 449466 GTCAAGGTGCTGGTGCGGCACACACGGCGCCCCGAGCTGGGCGACAAGTTCTCCTCTCGC 449407
Query 53554 CACGGCGCAAAAGGG-GACATGCGGAGCGGTCCTGACTCAGGAGGACATGCCCTTCGACA 53612
|||||| || ||||| | | || || || || | ||| ||| | |||||| |
Sbjct 449406 CACGGC-CAGAAGGGCGTGGTTGGGTGCA-TCGTGCCCGAGGCCGACCTCCCCTTCTCCG 449349
Query 53613 AGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGACGG 53672
|| |||||||||||||||||| ||||| ||||| |||| ||| |||||| | ||||| |
Sbjct 449348 AGCGCGGGGTGGTGCCCGACCTGATCATGAACCCGCACGGCTTCCCCTCCCGCATGACTG 449289
Query 53673 T 53673
|
Sbjct 449288 T 449288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406161348657364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |