Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq88 91.5 1e-13 >seq88 Length=544131 Score = 91.5 bits (100), Expect = 1e-13 Identities = 132/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 48511 GTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-CTT 48569 ||||||||| | || || | | ||| ||| ||| |||| |||||||| | || | Sbjct 449466 GTCAAGGTGCTGGTGCGGCACACACGGCGCCCCGAGCTGGGCGACAAGTTCTCCTCTCGC 449407 Query 48570 CACGGCGCAAAAGGGGACATG--TGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGAC 48627 |||||| || ||||| | || ||| | || || || ||| ||| | |||||| | Sbjct 449406 CACGGC-CAGAAGGG--CGTGGTTGGGTGCATCGTGCCCGAGGCCGACCTCCCCTTCTCC 449350 Query 48628 AAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 || |||||||||||||||||| ||||| ||||| |||| ||| |||||| | ||||| Sbjct 449349 GAGCGCGGGGTGGTGCCCGACCTGATCATGAACCCGCACGGCTTCCCCTCCCGCATGACT 449290 Query 48688 GT 48689 || Sbjct 449289 GT 449288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369505515739994