Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq243 675 0.0 seq260 486 2e-132 >seq243 Length=18593 Score = 675 bits (748), Expect = 0.0 Identities = 738/978 (75%), Gaps = 2/978 (0%) Strand=Plus/Minus Query 183196 TTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTG 183255 || || || ||| | || |||||| | |||||| | ||||| ||||||||||| || Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787 Query 183256 ATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTC-ATCGTTGCCTTCGTCGCTGCTCC 183314 ||||| || || | || ||||||| | ||| || || | || || |||||||||| Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 || || || || || || || |||||||| || | || || | | |||||||| || Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434 ||| || ||||| || || || || |||| ||||||||||| | || || || || || Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608 Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494 ||||||||| || || || || || ||| | ||||| ||||| ||||||||||| | || Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548 Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCG 183554 | ||||| || | || | | | |||||||||||||| |||||||| |||| ||| Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488 Query 183555 TCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGC 183614 | | ||||||||||| |||||| ||||||||| |||||||||||||| || || || Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428 Query 183615 TGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674 ||| ||| | | ||||| | || |||||||| || |||||||||||| | ||||| Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368 Query 183675 CAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 183734 ||| || || || | |||| | || ||||||||||| || ||||| | |||||||| Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308 Query 183735 CTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGG 183794 ||||| ||||| ||||| |||||||| || |||||||| | || ||||||||| || Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248 Query 183795 TTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATGG 183854 ||| | || ||||| || | |||||||||| ||||| || || ||| ||| Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188 Query 183855 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGG 183914 |||||| ||||| ||| ||||||| || |||||||| || |||||||||||||| || || Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128 Query 183915 TCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGC 183974 |||| | || ||||| || || || ||||| || ||||||||| | ||||||||| | || Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068 Query 183975 TGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAA 184034 |||||||||||| || || || |||||||||||| | ||| || |||||||||||||| Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008 Query 184035 CCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACAC 184094 | | |||||||| ||||| ||||| || | ||||| ||||||||||| | ||||| Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948 Query 184095 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGC 184154 ||||| || || | ||||||||| |||||| |||||||| ||||| || |||||||| Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888 Query 184155 TCACAACTTCCCTCTCGA 184172 ||||| ||||| || || Sbjct 2887 ACACAATTTCCCACTAGA 2870 >seq260 Length=66046 Score = 486 bits (538), Expect = 2e-132 Identities = 727/1027 (71%), Gaps = 4/1027 (0%) Strand=Plus/Minus Query 185955 GGATGGTTCGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGG 186014 || ||||| ||| || | |||||||||||| || || || ||||| ||| | |||||| Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598 Query 186015 TCTGGATTACTTCTTTTTCCC-ACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCAC 186073 || || || || || ||||| ||||| ||| | ||| | ||||| ||| | ||||| || Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539 Query 186074 AACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAA 186133 ||| ||||| | |||||||| || || || || ||||||| | |||||| || Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479 Query 186134 TTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACT 186193 ||| | || | || || || || || ||| | |||||| |||||| || || | | Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTT 57420 Query 186194 T-TGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGA 186252 | |||||||| || ||||||| ||| | | || |||| ||||||||| || || |||| Sbjct 57419 TATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGA 57360 Query 186253 ATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAA 186312 ||||| || || ||||| || ||| || | || || || ||||| || || || |||| Sbjct 57359 CATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAA 57300 Query 186313 TCAGTCGTCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTG 186372 || ||| || || || ||||| || || ||||| ||||||| ||||| || | Sbjct 57299 TCGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAG 57240 Query 186373 TCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCT 186432 | |||||| |||||| | || ||||| | || || || ||||| || || || Sbjct 57239 TTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGA 57180 Query 186433 CCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGA 186492 ||||| || ||||| || || | || | || ||| ||||||| ||||||||||||| Sbjct 57179 GTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGA 57120 Query 186493 CGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAG 186552 | |||||||| || || ||||||||||| || ||| | || || | ||| || || | | Sbjct 57119 CTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTG 57060 Query 186553 CAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACAT 186612 |||| ||||| | || |||||||||||||| | |||||||||||| |||||||||| Sbjct 57059 CAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACAT 57000 Query 186613 TCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGAT 186672 | || || || | || |||| ||||||||| ||||| | || || || || | | Sbjct 56999 TTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCT 56940 Query 186673 TCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGC 186732 | |||||||| || ||||| | |||||| ||||| |||||| | |||||||| ||| Sbjct 56939 TTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 56880 Query 186733 TCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTA 186792 | ||||| || || | ||| | ||||| | | |||| | | || | || | | Sbjct 56879 TATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAA 56820 Query 186793 ACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCG 186852 | | ||||| | || || || || || | | || || || || || || || | Sbjct 56819 ATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTG 56760 Query 186853 AGACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAG 186912 | || || ||||| || ||||| || |||||||||||| | ||||| |||||||| | Sbjct 56759 AAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTC 56700 Query 186913 TGGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTC 186972 ||||| || |||||||| || ||||| || || || || || ||| | || ||||||| Sbjct 56699 AAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTC 56640 Query 186973 TGTGATA 186979 | | ||| Sbjct 56639 TTTAATA 56633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622067491820880