Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_031235.1
Length=194437
Score E
Sequences producing significant alignments: (Bits) Value
seq243 675 0.0
seq260 486 2e-132
>seq243
Length=18593
Score = 675 bits (748), Expect = 0.0
Identities = 738/978 (75%), Gaps = 2/978 (0%)
Strand=Plus/Minus
Query 183196 TTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTG 183255
|| || || ||| | || |||||| | |||||| | ||||| ||||||||||| ||
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 183256 ATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTC-ATCGTTGCCTTCGTCGCTGCTCC 183314
||||| || || | || ||||||| | ||| || || | || || ||||||||||
Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728
Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374
|| || || || || || || |||||||| || | || || | | |||||||| ||
Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668
Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434
||| || ||||| || || || || |||| ||||||||||| | || || || || ||
Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608
Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494
||||||||| || || || || || ||| | ||||| ||||| ||||||||||| | ||
Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548
Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCG 183554
| ||||| || | || | | | |||||||||||||| |||||||| |||| |||
Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488
Query 183555 TCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGC 183614
| | ||||||||||| |||||| ||||||||| |||||||||||||| || || ||
Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428
Query 183615 TGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674
||| ||| | | ||||| | || |||||||| || |||||||||||| | |||||
Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368
Query 183675 CAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 183734
||| || || || | |||| | || ||||||||||| || ||||| | ||||||||
Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308
Query 183735 CTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGG 183794
||||| ||||| ||||| |||||||| || |||||||| | || ||||||||| ||
Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248
Query 183795 TTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATGG 183854
||| | || ||||| || | |||||||||| ||||| || || ||| |||
Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188
Query 183855 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGG 183914
|||||| ||||| ||| ||||||| || |||||||| || |||||||||||||| || ||
Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128
Query 183915 TCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGC 183974
|||| | || ||||| || || || ||||| || ||||||||| | ||||||||| | ||
Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068
Query 183975 TGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAA 184034
|||||||||||| || || || |||||||||||| | ||| || ||||||||||||||
Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008
Query 184035 CCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACAC 184094
| | |||||||| ||||| ||||| || | ||||| ||||||||||| | |||||
Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948
Query 184095 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGC 184154
||||| || || | ||||||||| |||||| |||||||| ||||| || ||||||||
Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888
Query 184155 TCACAACTTCCCTCTCGA 184172
||||| ||||| || ||
Sbjct 2887 ACACAATTTCCCACTAGA 2870
>seq260
Length=66046
Score = 486 bits (538), Expect = 2e-132
Identities = 727/1027 (71%), Gaps = 4/1027 (0%)
Strand=Plus/Minus
Query 185955 GGATGGTTCGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGG 186014
|| ||||| ||| || | |||||||||||| || || || ||||| ||| | ||||||
Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598
Query 186015 TCTGGATTACTTCTTTTTCCC-ACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCAC 186073
|| || || || || ||||| ||||| ||| | ||| | ||||| ||| | ||||| ||
Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539
Query 186074 AACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAA 186133
||| ||||| | |||||||| || || || || ||||||| | |||||| ||
Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479
Query 186134 TTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACT 186193
||| | || | || || || || || ||| | |||||| |||||| || || | |
Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTT 57420
Query 186194 T-TGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGA 186252
| |||||||| || ||||||| ||| | | || |||| ||||||||| || || ||||
Sbjct 57419 TATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGA 57360
Query 186253 ATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAA 186312
||||| || || ||||| || ||| || | || || || ||||| || || || ||||
Sbjct 57359 CATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAA 57300
Query 186313 TCAGTCGTCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTG 186372
|| ||| || || || ||||| || || ||||| ||||||| ||||| || |
Sbjct 57299 TCGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAG 57240
Query 186373 TCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCT 186432
| |||||| |||||| | || ||||| | || || || ||||| || || ||
Sbjct 57239 TTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGA 57180
Query 186433 CCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGA 186492
||||| || ||||| || || | || | || ||| ||||||| |||||||||||||
Sbjct 57179 GTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGA 57120
Query 186493 CGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAG 186552
| |||||||| || || ||||||||||| || ||| | || || | ||| || || | |
Sbjct 57119 CTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTG 57060
Query 186553 CAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACAT 186612
|||| ||||| | || |||||||||||||| | |||||||||||| ||||||||||
Sbjct 57059 CAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACAT 57000
Query 186613 TCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGAT 186672
| || || || | || |||| ||||||||| ||||| | || || || || | |
Sbjct 56999 TTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCT 56940
Query 186673 TCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGC 186732
| |||||||| || ||||| | |||||| ||||| |||||| | |||||||| |||
Sbjct 56939 TTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 56880
Query 186733 TCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTA 186792
| ||||| || || | ||| | ||||| | | |||| | | || | || | |
Sbjct 56879 TATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAA 56820
Query 186793 ACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCG 186852
| | ||||| | || || || || || | | || || || || || || || |
Sbjct 56819 ATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTG 56760
Query 186853 AGACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAG 186912
| || || ||||| || ||||| || |||||||||||| | ||||| |||||||| |
Sbjct 56759 AAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTC 56700
Query 186913 TGGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTC 186972
||||| || |||||||| || ||||| || || || || || ||| | || |||||||
Sbjct 56699 AAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTC 56640
Query 186973 TGTGATA 186979
| | |||
Sbjct 56639 TTTAATA 56633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622067491820880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |