Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_031242.1
Length=174307
Score E
Sequences producing significant alignments: (Bits) Value
seq243 625 3e-174
seq260 538 4e-148
seq88 86.0 7e-12
>seq243
Length=18593
Score = 625 bits (692), Expect = 3e-174
Identities = 727/978 (74%), Gaps = 2/978 (0%)
Strand=Plus/Minus
Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987
|| ||| | |||||||| || || || || || ||||| |||||||| || || ||
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCC 164046
||||| |||| | | | |||| ||||| ||| || ||||| || |||| ||||||
Sbjct 3786 ATGAT-CCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728
Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106
|| || || || ||||| || |||||||| || | ||||| | | |||||||| ||
Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668
Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166
||| || ||||| ||||| | || |||| ||||| || ||| | || || ||||| ||
Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608
Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226
||||||||| || ||| ||||||||| | || || ||||| |||| |||||| | ||
Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548
Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286
| ||||| | | || || | | | |||||||||||||| |||||| | |||| |||
Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488
Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346
| | ||||||||||| ||||| || || || || || ||||| |||||||| | |||
Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428
Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406
|| ||| | | ||||| | || |||||||| |||||||||| ||||| | || ||
Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368
Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCC 164466
||||| || ||||| | ||| | || ||||| || || || ||||| | ||||||||
Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308
Query 164467 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526
||||||||||| || || || ||||| ||||| ||||| | || ||||||||| ||
Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248
Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586
||| | || |||||||| | ||||||| || || ||||| || || ||| |||
Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188
Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646
|||||| || || || |||||||||| ||||||||||| || ||||| || || || ||
Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128
Query 164647 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 164706
|||| | |||||||||||||| || || || ||||| ||||| | ||||||||| | ||
Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068
Query 164707 AGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAA 164766
|| ||||| ||||| ||||| |||||||||||| | || || || |||||||| ||
Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008
Query 164767 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164826
| | || ||||||||||| ||||| || | | ||| || |||||||| | |||||
Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948
Query 164827 CTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGC 164886
||||| || || | ||||||||| ||| || |||||||| ||||| || ||||||||
Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888
Query 164887 TCACAACTTCCCTCTCGA 164904
||||| ||||| || ||
Sbjct 2887 ACACAATTTCCCACTAGA 2870
>seq260
Length=66046
Score = 538 bits (596), Expect = 4e-148
Identities = 738/1027 (72%), Gaps = 8/1027 (1%)
Strand=Plus/Minus
Query 165147 GGTTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 165206
|||||||| ||| || |||| ||||||||| | || ||||| || ||| ||||||||
Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598
Query 165207 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGAC 165265
|| || || || || ||||| ||||| ||| | || | || |||||| | ||||| ||
Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539
Query 165266 TACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAA 165325
|| || || | |||||||||||| || | || | ||| ||| | |||||| ||
Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479
Query 165326 CTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCT 165385
|||| | |||| || |||||||| || || | |||||| |||||| | | || |
Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTTT 57419
Query 165386 ATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGAC 165445
||||||||| || ||||||| || || | || |||||||||||||| || || |||||
Sbjct 57418 ATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGAC 57359
Query 165446 TTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACT 165505
||||| || || ||||| || ||| | | || || || |||||||| || || ||| |
Sbjct 57358 ATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAAT 57299
Query 165506 GGCACG---ACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 165562
||||| | ||| ||||| || || || || ||||| || |||| ||||||||
Sbjct 57298 CGCACGTTCAGTTAAA---ATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGC 57242
Query 165563 TGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACC 165622
|| || ||| ||| ||| | || || || | || ||||| ||||| || |||||
Sbjct 57241 AGTTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACC 57182
Query 165623 GTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTG 165682
| || || || ||||| || ||||| || | | ||| ||||||| ||||| |||||
Sbjct 57181 GAGTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTG 57122
Query 165683 GACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTC 165742
||| ||||||| ||||| |||||||| || || ||| | |||| | || | ||||
Sbjct 57121 GACTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTG 57062
Query 165743 TGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACAC 165802
||| |||||||| | |||||||| |||||| | | ||||||||| || ||||||||
Sbjct 57061 TGCAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACAC 57002
Query 165803 TTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCG 165862
|| || ||| || ||||| | ||| ||||||||||| | || || || || ||
Sbjct 57001 ATTTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCG 56942
Query 165863 TTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTAT 165922
|| ||||| || || || ||| | || || ||||| |||||| | || ||||||||
Sbjct 56941 CTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTAT 56882
Query 165923 GCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACT 165982
| | ||||| || || | || | ||||| ||| || ||||| | | || | ||| |
Sbjct 56881 GTTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATT 56822
Query 165983 CAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTT 166042
||| | ||||| | ||||| || || || || ||| | |||||||| || ||||| ||
Sbjct 56821 AAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATT 56762
Query 166043 TGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCC 166102
|||||| || ||||| ||||| || || | |||||||| | ||||| ||| ||||| |
Sbjct 56761 TGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGC 56702
Query 166103 TGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGC 166162
| ||| || |||||||| || || || ||||| || || || || ||| | || |||||
Sbjct 56701 TCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 56642
Query 166163 ACTTTAA 166169
||||||
Sbjct 56641 TCTTTAA 56635
>seq88
Length=544131
Score = 86.0 bits (94), Expect = 7e-12
Identities = 115/160 (72%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 161574 AGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGG 161633
|||| || || || ||| | |||||| || ||||| ||||| || || || |||||||
Sbjct 205866 AGGAGGCCGGCGTCGACCTGCCCTACTCCTGCCGTGCCGGCGCCTGCTCCTCCTGCGCGG 205807
Query 161634 GAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCCTTCCTGGACGATGACCAAA 161693
| || || | |||| ||| ||||| ||||||||||||||||||||| ||||| |
Sbjct 205806 GCAAGCTGGATGCTGGGGACGTGGACCAGTCCGACCAGTCCTTCCTGGACGACGACCAGA 205747
Query 161694 TCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCAC 161733
|| || || | ||||| ||||| | || |||||
Sbjct 205746 TCTCCAACGGCTTTGTGCTGACGTGTGTGGCCTACCCCAC 205707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557651792965680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |