Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq243 625 3e-174 seq260 538 4e-148 seq88 86.0 7e-12 >seq243 Length=18593 Score = 625 bits (692), Expect = 3e-174 Identities = 727/978 (74%), Gaps = 2/978 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 || ||| | |||||||| || || || || || ||||| |||||||| || || || Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCC 164046 ||||| |||| | | | |||| ||||| ||| || ||||| || |||| |||||| Sbjct 3786 ATGAT-CCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 || || || || ||||| || |||||||| || | ||||| | | |||||||| || Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668 Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166 ||| || ||||| ||||| | || |||| ||||| || ||| | || || ||||| || Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608 Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226 ||||||||| || ||| ||||||||| | || || ||||| |||| |||||| | || Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548 Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286 | ||||| | | || || | | | |||||||||||||| |||||| | |||| ||| Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488 Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346 | | ||||||||||| ||||| || || || || || ||||| |||||||| | ||| Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428 Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406 || ||| | | ||||| | || |||||||| |||||||||| ||||| | || || Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368 Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCC 164466 ||||| || ||||| | ||| | || ||||| || || || ||||| | |||||||| Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308 Query 164467 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526 ||||||||||| || || || ||||| ||||| ||||| | || ||||||||| || Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248 Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586 ||| | || |||||||| | ||||||| || || ||||| || || ||| ||| Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188 Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646 |||||| || || || |||||||||| ||||||||||| || ||||| || || || || Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128 Query 164647 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 164706 |||| | |||||||||||||| || || || ||||| ||||| | ||||||||| | || Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068 Query 164707 AGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAA 164766 || ||||| ||||| ||||| |||||||||||| | || || || |||||||| || Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008 Query 164767 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164826 | | || ||||||||||| ||||| || | | ||| || |||||||| | ||||| Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948 Query 164827 CTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGC 164886 ||||| || || | ||||||||| ||| || |||||||| ||||| || |||||||| Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888 Query 164887 TCACAACTTCCCTCTCGA 164904 ||||| ||||| || || Sbjct 2887 ACACAATTTCCCACTAGA 2870 >seq260 Length=66046 Score = 538 bits (596), Expect = 4e-148 Identities = 738/1027 (72%), Gaps = 8/1027 (1%) Strand=Plus/Minus Query 165147 GGTTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 165206 |||||||| ||| || |||| ||||||||| | || ||||| || ||| |||||||| Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598 Query 165207 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGAC 165265 || || || || || ||||| ||||| ||| | || | || |||||| | ||||| || Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539 Query 165266 TACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAA 165325 || || || | |||||||||||| || | || | ||| ||| | |||||| || Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479 Query 165326 CTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCT 165385 |||| | |||| || |||||||| || || | |||||| |||||| | | || | Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTTT 57419 Query 165386 ATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGAC 165445 ||||||||| || ||||||| || || | || |||||||||||||| || || ||||| Sbjct 57418 ATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGAC 57359 Query 165446 TTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACT 165505 ||||| || || ||||| || ||| | | || || || |||||||| || || ||| | Sbjct 57358 ATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAAT 57299 Query 165506 GGCACG---ACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 165562 ||||| | ||| ||||| || || || || ||||| || |||| |||||||| Sbjct 57298 CGCACGTTCAGTTAAA---ATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGC 57242 Query 165563 TGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACC 165622 || || ||| ||| ||| | || || || | || ||||| ||||| || ||||| Sbjct 57241 AGTTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACC 57182 Query 165623 GTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTG 165682 | || || || ||||| || ||||| || | | ||| ||||||| ||||| ||||| Sbjct 57181 GAGTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTG 57122 Query 165683 GACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTC 165742 ||| ||||||| ||||| |||||||| || || ||| | |||| | || | |||| Sbjct 57121 GACTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTG 57062 Query 165743 TGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACAC 165802 ||| |||||||| | |||||||| |||||| | | ||||||||| || |||||||| Sbjct 57061 TGCAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACAC 57002 Query 165803 TTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCG 165862 || || ||| || ||||| | ||| ||||||||||| | || || || || || Sbjct 57001 ATTTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCG 56942 Query 165863 TTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTAT 165922 || ||||| || || || ||| | || || ||||| |||||| | || |||||||| Sbjct 56941 CTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTAT 56882 Query 165923 GCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACT 165982 | | ||||| || || | || | ||||| ||| || ||||| | | || | ||| | Sbjct 56881 GTTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATT 56822 Query 165983 CAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTT 166042 ||| | ||||| | ||||| || || || || ||| | |||||||| || ||||| || Sbjct 56821 AAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATT 56762 Query 166043 TGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCC 166102 |||||| || ||||| ||||| || || | |||||||| | ||||| ||| ||||| | Sbjct 56761 TGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGC 56702 Query 166103 TGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGC 166162 | ||| || |||||||| || || || ||||| || || || || ||| | || ||||| Sbjct 56701 TCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 56642 Query 166163 ACTTTAA 166169 |||||| Sbjct 56641 TCTTTAA 56635 >seq88 Length=544131 Score = 86.0 bits (94), Expect = 7e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 161574 AGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGG 161633 |||| || || || ||| | |||||| || ||||| ||||| || || || ||||||| Sbjct 205866 AGGAGGCCGGCGTCGACCTGCCCTACTCCTGCCGTGCCGGCGCCTGCTCCTCCTGCGCGG 205807 Query 161634 GAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCCTTCCTGGACGATGACCAAA 161693 | || || | |||| ||| ||||| ||||||||||||||||||||| ||||| | Sbjct 205806 GCAAGCTGGATGCTGGGGACGTGGACCAGTCCGACCAGTCCTTCCTGGACGACGACCAGA 205747 Query 161694 TCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCAC 161733 || || || | ||||| ||||| | || ||||| Sbjct 205746 TCTCCAACGGCTTTGTGCTGACGTGTGTGGCCTACCCCAC 205707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557651792965680