Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_031935.1
Length=186386
Score E
Sequences producing significant alignments: (Bits) Value
seq243 652 0.0
seq260 547 8e-151
>seq243
Length=18593
Score = 652 bits (722), Expect = 0.0
Identities = 733/978 (75%), Gaps = 2/978 (0%)
Strand=Plus/Minus
Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657
|| ||| | |||||||| ||| | || || | ||||| |||||||| ||||| ||
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGTTTC-ATCGTCGCTTTCGTCGCTGCTCC 177716
||||||||||| | | | || ||| |||||| || ||||||| ||||||||||
Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728
Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776
|| || || || || || || || ||||| || | ||||| | | ||||| || ||
Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668
Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836
||| |||||||| ||||| || || |||| ||||| |||||| | || || || || ||
Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608
Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896
||||||||| |||||||| || || ||| | || |||||||| |||| |||||| | |
Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548
Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956
| ||||| | | || || | | |||||||||||||||| |||||| | |||| |||
Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488
Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016
||||||||||||| |||||| || || || || || || || || ||||| ||||
Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428
Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076
||||||| || ||||||| | || |||||||| |||||||| | |||||| | |||||
Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368
Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136
||| || ||||| | ||| | || ||||||||||| || ||||| | ||||||||
Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308
Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196
||||| ||| | || || |||||||| ||||||||||| | || ||| ||||| ||
Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248
Query 178197 TTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAGAACTATGG 178256
||| | || ||||| || | |||||||||| || || |||||| | ||| |||
Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188
Query 178257 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGG 178316
|||||| ||||| ||| ||||||| || ||||||||||| ||||||||||| || |||||
Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128
Query 178317 TCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 178376
||| | || |||||||||||||| || || ||||| ||||| | ||||||||| | ||
Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068
Query 178377 AGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAA 178436
|| ||||| ||||| ||||| ||||| |||||| | ||| || || |||||||| ||
Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008
Query 178437 CCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACAC 178496
| | || ||||||||||| ||||| || | | ||| || || || | |||||
Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948
Query 178497 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGC 178556
||||| || || | ||||||||| ||||||||||||||| ||||| || ||||||||
Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888
Query 178557 TCACAACTTCCCTCTTGA 178574
||||| ||||| || ||
Sbjct 2887 ACACAATTTCCCACTAGA 2870
>seq260
Length=66046
Score = 547 bits (606), Expect = 8e-151
Identities = 746/1037 (72%), Gaps = 3/1037 (0%)
Strand=Plus/Minus
Query 178822 AGAAACAAAGGGGGTGGTTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTT 178881
||||| || | || ||||||||| | | |||||||||||| |||||||| || || |
Sbjct 57667 AGAAA-AACGTGGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTAT 57609
Query 178882 TTGTTGGTTGGTCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGC 178941
|| |||| ||||||||||| | | ||||||||||| || | ||| | || ||||||
Sbjct 57608 TTATTGGCTGGTCAGGTCTATTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGT 57549
Query 178942 TCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTG 179001
| || || |||||||| || | || ||||||||||| || | ||| |||| ||| | |
Sbjct 57548 TAACTGGAACAACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAG 57489
Query 179002 AGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCC 179061
|||| || || || | |||| |||||| || || || ||| | | | || |||||
Sbjct 57488 AGGGTTGCAACTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTT 57429
Query 179062 TACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGG 179121
|| | || |||||||||| |||||||| || ||||| || ||| ||||||||| |
Sbjct 57428 TATTATTTTTATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAG 57369
Query 179122 GACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGC 179181
| || ||| | ||||| || || |||||||| || || | || || || |||||||| |
Sbjct 57368 GTCTTTGGACATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTC 57309
Query 179182 AGTTTGAAATCGCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTC 179241
| || |||||||||||| ||| ||||| || || || ||||| || ||||||| |
Sbjct 57308 AATTCGAAATCGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCAC 57249
Query 179242 CAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCT 179301
| ||||| || ||||| |||| ||| | || || || | || || || ||||| |
Sbjct 57248 CTATTGCAGTTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTT 57189
Query 179302 TTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCC 179361
|||| ||| ||||| |||||||| |||||||| || | | ||| | || || ||||
Sbjct 57188 TTGCACCGAGTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCC 57129
Query 179362 ACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCAT 179421
|||||||||| | || || || || ||||||||||| || ||| | || || | ||
Sbjct 57128 ACAACTGGACTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGC 57069
Query 179422 TGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAAT 179481
| |||||||| |||||||| || |||||||| || || || |||||||| | |||
Sbjct 57068 TTCTTTGTGCAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTG 57009
Query 179482 CAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTG 179541
|||| ||||| || || | || || |||| ||| || || ||||| | || || |
Sbjct 57008 CAAACACATTTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAG 56949
Query 179542 CCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATT 179601
| || || || ||||| || || || ||| | || || ||||| |||||| ||||||
Sbjct 56948 CAAATCGCTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATT 56889
Query 179602 TCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTC 179661
|||||||||| ||||| || || | ||| | ||||| | ||||| | | ||
Sbjct 56888 TCTTTATGTTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCT 56829
Query 179662 TTGCACTTAACCTTA-GAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGAT 179720
| ||| |||| ||| | || | || || ||||||||||| || | || || || ||
Sbjct 56828 TAGCA-TTAAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGAC 56770
Query 179721 CCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGG 179780
|| || || || || || ||||| || || || || |||||||||||| | |||||||||
Sbjct 56769 CCAGAATTTGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGG 56710
Query 179781 ATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGA 179840
||||| | ||||| || |||||||| || ||||| || || || || || ||| |
Sbjct 56709 ATGGCTGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGT 56650
Query 179841 GGCAACGCTCTGTGATA 179857
|| |||||||| | |||
Sbjct 56649 GGAAACGCTCTTTAATA 56633
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 18369 GGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACGGG 18428
|||| | || ||||||||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 40842 GGGTCGATGCCCGAGTGGTTAATGGGGGCGGATTGTAAATCCGCTGGCTTTGCCTACGCT 40901
Query 18429 GGTTCAAATCCCTCCCTGCCCA 18450
||||||||||| | | |||||
Sbjct 40902 GGTTCAAATCCAGCTCGGCCCA 40923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596304412263840
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