Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq243 652 0.0 seq260 547 8e-151 >seq243 Length=18593 Score = 652 bits (722), Expect = 0.0 Identities = 733/978 (75%), Gaps = 2/978 (0%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 || ||| | |||||||| ||| | || || | ||||| |||||||| ||||| || Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGTTTC-ATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | || ||| |||||| || ||||||| |||||||||| Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 || || || || || || || || ||||| || | ||||| | | ||||| || || Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 ||| |||||||| ||||| || || |||| ||||| |||||| | || || || || || Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 ||||||||| |||||||| || || ||| | || |||||||| |||| |||||| | | Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | ||||| | | || || | | |||||||||||||||| |||||| | |||| ||| Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 ||||||||||||| |||||| || || || || || || || || ||||| |||| Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076 ||||||| || ||||||| | || |||||||| |||||||| | |||||| | ||||| Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368 Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136 ||| || ||||| | ||| | || ||||||||||| || ||||| | |||||||| Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308 Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196 ||||| ||| | || || |||||||| ||||||||||| | || ||| ||||| || Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248 Query 178197 TTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAGAACTATGG 178256 ||| | || ||||| || | |||||||||| || || |||||| | ||| ||| Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188 Query 178257 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGG 178316 |||||| ||||| ||| ||||||| || ||||||||||| ||||||||||| || ||||| Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128 Query 178317 TCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 178376 ||| | || |||||||||||||| || || ||||| ||||| | ||||||||| | || Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068 Query 178377 AGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAA 178436 || ||||| ||||| ||||| ||||| |||||| | ||| || || |||||||| || Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008 Query 178437 CCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACAC 178496 | | || ||||||||||| ||||| || | | ||| || || || | ||||| Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948 Query 178497 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGC 178556 ||||| || || | ||||||||| ||||||||||||||| ||||| || |||||||| Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888 Query 178557 TCACAACTTCCCTCTTGA 178574 ||||| ||||| || || Sbjct 2887 ACACAATTTCCCACTAGA 2870 >seq260 Length=66046 Score = 547 bits (606), Expect = 8e-151 Identities = 746/1037 (72%), Gaps = 3/1037 (0%) Strand=Plus/Minus Query 178822 AGAAACAAAGGGGGTGGTTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTT 178881 ||||| || | || ||||||||| | | |||||||||||| |||||||| || || | Sbjct 57667 AGAAA-AACGTGGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTAT 57609 Query 178882 TTGTTGGTTGGTCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGC 178941 || |||| ||||||||||| | | ||||||||||| || | ||| | || |||||| Sbjct 57608 TTATTGGCTGGTCAGGTCTATTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGT 57549 Query 178942 TCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTG 179001 | || || |||||||| || | || ||||||||||| || | ||| |||| ||| | | Sbjct 57548 TAACTGGAACAACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAG 57489 Query 179002 AGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCC 179061 |||| || || || | |||| |||||| || || || ||| | | | || ||||| Sbjct 57488 AGGGTTGCAACTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTT 57429 Query 179062 TACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGG 179121 || | || |||||||||| |||||||| || ||||| || ||| ||||||||| | Sbjct 57428 TATTATTTTTATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAG 57369 Query 179122 GACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGC 179181 | || ||| | ||||| || || |||||||| || || | || || || |||||||| | Sbjct 57368 GTCTTTGGACATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTC 57309 Query 179182 AGTTTGAAATCGCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTC 179241 | || |||||||||||| ||| ||||| || || || ||||| || ||||||| | Sbjct 57308 AATTCGAAATCGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCAC 57249 Query 179242 CAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCT 179301 | ||||| || ||||| |||| ||| | || || || | || || || ||||| | Sbjct 57248 CTATTGCAGTTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTT 57189 Query 179302 TTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCC 179361 |||| ||| ||||| |||||||| |||||||| || | | ||| | || || |||| Sbjct 57188 TTGCACCGAGTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCC 57129 Query 179362 ACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCAT 179421 |||||||||| | || || || || ||||||||||| || ||| | || || | || Sbjct 57128 ACAACTGGACTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGC 57069 Query 179422 TGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAAT 179481 | |||||||| |||||||| || |||||||| || || || |||||||| | ||| Sbjct 57068 TTCTTTGTGCAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTG 57009 Query 179482 CAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTG 179541 |||| ||||| || || | || || |||| ||| || || ||||| | || || | Sbjct 57008 CAAACACATTTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAG 56949 Query 179542 CCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATT 179601 | || || || ||||| || || || ||| | || || ||||| |||||| |||||| Sbjct 56948 CAAATCGCTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATT 56889 Query 179602 TCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTC 179661 |||||||||| ||||| || || | ||| | ||||| | ||||| | | || Sbjct 56888 TCTTTATGTTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCT 56829 Query 179662 TTGCACTTAACCTTA-GAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGAT 179720 | ||| |||| ||| | || | || || ||||||||||| || | || || || || Sbjct 56828 TAGCA-TTAAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGAC 56770 Query 179721 CCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGG 179780 || || || || || || ||||| || || || || |||||||||||| | ||||||||| Sbjct 56769 CCAGAATTTGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGG 56710 Query 179781 ATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGA 179840 ||||| | ||||| || |||||||| || ||||| || || || || || ||| | Sbjct 56709 ATGGCTGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGT 56650 Query 179841 GGCAACGCTCTGTGATA 179857 || |||||||| | ||| Sbjct 56649 GGAAACGCTCTTTAATA 56633 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 18369 GGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACGGG 18428 |||| | || ||||||||||||||| |||||| |||||||||||||||| |||||||| Sbjct 40842 GGGTCGATGCCCGAGTGGTTAATGGGGGCGGATTGTAAATCCGCTGGCTTTGCCTACGCT 40901 Query 18429 GGTTCAAATCCCTCCCTGCCCA 18450 ||||||||||| | | ||||| Sbjct 40902 GGTTCAAATCCAGCTCGGCCCA 40923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596304412263840