Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_031944.1
Length=185102
Score E
Sequences producing significant alignments: (Bits) Value
seq243 618 5e-172
seq260 511 6e-140
seq88 84.2 3e-11
>seq243
Length=18593
Score = 618 bits (684), Expect = 5e-172
Identities = 723/977 (74%), Gaps = 0/977 (0%)
Strand=Plus/Minus
Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411
|| ||| | |||||||| |||||| ||||| | ||||| |||||||| || || ||
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471
|||||||| | | ||||||| ||| ||| || ||||| || |||| ||||||
Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCCG 3727
Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531
|| || || || || || || |||||||| || | ||||| | | ||||| || |||
Sbjct 3726 CCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAAC 3667
Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591
|| || ||||| ||||| || || |||| |||||||| ||| | || || || || |||
Sbjct 3666 ATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAATC 3607
Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651
|||||||| || ||| || |||||||| || || ||||| |||| |||||| | ||
Sbjct 3606 TGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGTA 3547
Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711
| ||||| || | || || | | | |||||||||||||| |||||||| || | |||
Sbjct 3546 TGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCGT 3487
Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771
| |||||||| || |||||| |||||||| || || || ||||| ||||| | |||
Sbjct 3486 TTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCT 3427
Query 169772 GTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATC 169831
|| ||| | | || || |||| ||||| || |||||||| | |||||| | |||||
Sbjct 3426 GTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTATT 3367
Query 169832 TCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCC 169891
|| || || || || | ||| | || |||||||| || || ||||| | ||||||||
Sbjct 3366 TCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCCA 3307
Query 169892 TTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951
||||| |||||||||||||| || || |||||||| || | ||| || ||||| |||
Sbjct 3306 TTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGGT 3247
Query 169952 AGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGT 170011
| || ||||| | | | |||||||| || || ||||| || ||| ||||
Sbjct 3246 TCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGGT 3187
Query 170012 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGT 170071
||||| ||||| ||| ||||||| || ||||||||||| || ||||| || || ||||||
Sbjct 3186 TACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGGT 3127
Query 170072 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCA 170131
|| | || ||||||||||| || || || ||||| ||||| | ||||||||| | ||
Sbjct 3126 CGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGCT 3067
Query 170132 GCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAAC 170191
|| ||||| |||||||| || ||||| || ||| | ||| | || || ||||| || |||
Sbjct 3066 GCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAAC 3007
Query 170192 CTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACC 170251
| || ||||||||||| ||||| || | | ||| || |||||||| | |||||
Sbjct 3006 TTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACACT 2947
Query 170252 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCT 170311
||||| || || | ||||||||| |||||| |||||||| ||||| || ||||||||
Sbjct 2946 TGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCA 2887
Query 170312 CACAACTTCCCTCTCGA 170328
||||| ||||| || ||
Sbjct 2886 CACAATTTCCCACTAGA 2870
>seq260
Length=66046
Score = 511 bits (566), Expect = 6e-140
Identities = 732/1026 (71%), Gaps = 4/1026 (0%)
Strand=Plus/Minus
Query 170589 GGGTGGTTCGATGTCCTGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGG 170648
|| ||||| ||| || | |||||||||||| |||||||| ||||||||| | ||||||
Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598
Query 170649 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCAC 170707
|| || || || || ||||| ||||| ||| | ||| | || || ||| | || || ||
Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539
Query 170708 GACATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAA 170767
|||||||| | |||||| || || || | || | ||| || | || ||| ||
Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479
Query 170768 TTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACT 170827
|| | || | ||||| || || || ||| || |||||| |||||| || || | |
Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTT 57420
Query 170828 T-TGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGA 170886
| |||||||| || |||| || ||||| || |||| |||||||| || || ||||
Sbjct 57419 TATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGA 57360
Query 170887 ATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAA 170946
||||| || || ||||| || ||| || | || || || |||||||| || || ||||
Sbjct 57359 CATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAA 57300
Query 170947 TCAGTCGTCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTG 171006
|| ||| || ||| | || || || ||||| || || |||| ||||| || |
Sbjct 57299 TCGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAG 57240
Query 171007 TGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTT 171066
| ||||| || || | || || || | || || || |||||||| || |||||
Sbjct 57239 TTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGA 57180
Query 171067 CCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGA 171126
||||| |||||||| || ||||| || | | ||| | |||||||||||||||||||
Sbjct 57179 GTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGA 57120
Query 171127 CACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTG 171186
| ||||||| |||||||||||||||||||| ||| | || || | ||| | |||| ||
Sbjct 57119 CTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTG 57060
Query 171187 CAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCT 171246
|||||||||| | |||||||| |||||| | | ||||||||| || |||||||| |
Sbjct 57059 CAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACAT 57000
Query 171247 TTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTT 171306
|| || ||| | | ||||| | ||||| || |||||| | || || || ||||| |
Sbjct 56999 TTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCT 56940
Query 171307 TCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGC 171366
| ||||| || || || ||| | ||||| ||||| |||||||| ||||||||||||
Sbjct 56939 TTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 56880
Query 171367 TGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTA 171426
| ||||| || || | ||| | ||| ||| | | || | | || | || | |
Sbjct 56879 TATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAA 56820
Query 171427 ATCTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCG 171486
|| | | || | |||||||| || || | | || || ||||| ||||| || |
Sbjct 56819 ATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTG 56760
Query 171487 AGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAG 171546
| || || ||||| || || || || |||||||||||| ||||||| |||||||| |
Sbjct 56759 AAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTC 56700
Query 171547 TAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCAC 171606
||| || || |||||||| || || ||||||||||| ||| |||| ||||| || || |
Sbjct 56699 AAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTC 56640
Query 171607 TTTGAT 171612
||| ||
Sbjct 56639 TTTAAT 56634
>seq88
Length=544131
Score = 84.2 bits (92), Expect = 3e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 167467 AGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGCGCTTGTTCGTCGTGCGCGG 167526
|||| || || || ||| | |||||| |||||||| ||||| || || || |||||||
Sbjct 205866 AGGAGGCCGGCGTCGACCTGCCCTACTCCTGCCGTGCCGGCGCCTGCTCCTCCTGCGCGG 205807
Query 167527 GAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCCTTCCTGGACGATGATCAAA 167586
| || || |||| ||| || || ||| || |||||||||||||| || || |
Sbjct 205806 GCAAGCTGGATGCTGGGGACGTGGACCAGTCCGACCAGTCCTTCCTGGACGACGACCAGA 205747
Query 167587 TTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCAACCAGCGACTG 167635
| || | || || | || || |||||| |||| || ||| ||||||
Sbjct 205746 TCTCCAACGGCTTTGTGCTGACGTGTGTGGCCTACCCCACCTCCGACTG 205698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592195631472480
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