Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq133 167 5e-36
seq149 118 2e-21
>seq133
Length=726431
Score = 167 bits (184), Expect = 5e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || |||||||| || ||||| || | ||| || || |||||||||||||| |
Sbjct 170691 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 170750
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||| ||||| || || || ||||||||||||| || || ||||| ||
Sbjct 170751 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGG 170810
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| || || || | || || ||||| || | || |||
Sbjct 170811 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCACT 170870
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| || || ||||| ||||||| ||||| ||||| ||||||||
Sbjct 170871 TCGAGCGTAATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 170917
Score = 118 bits (130), Expect = 2e-21
Identities = 118/153 (77%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || |||||||| || ||||| || | ||| || || |||||||||||||| |
Sbjct 170919 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 170978
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||| ||||| || || || ||||||||||||| || |||||||| ||
Sbjct 170979 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGGG 171038
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025
|| ||||||||||| |||||||| || || |||
Sbjct 171039 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACG 171071
>seq149
Length=203194
Score = 118 bits (130), Expect = 2e-21
Identities = 118/153 (77%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||||||||| || ||||| || | ||| || || |||||||||||||| |
Sbjct 6849 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6908
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || || |||||||||| || |||||||| ||
Sbjct 6909 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCCGGGGGG 6968
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025
|| |||||||| || || ||||| || || |||
Sbjct 6969 ATTCCCTCCTTATCCTGAATCTTGGCCTTCACG 7001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046734184156596
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |