Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq133 187 2e-42 seq149 114 1e-20 >seq133 Length=726431 Score = 187 bits (206), Expect = 2e-42 Identities = 181/230 (79%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| ||||| ||| ||||||||| ||||| |||||||| Sbjct 170690 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 170749 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| ||||||||||||||||| || ||||||||||| ||||| | || Sbjct 170750 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGG 170809 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || |||| || | | | |||||| ||||||| Sbjct 170810 GATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTGTCAATGGTGTCGGAGGACTCCA 170868 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| || || || |||||||||||||| ||||| ||||||||| Sbjct 170869 CTTCGAGCGTAATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 170918 Score = 158 bits (174), Expect = 1e-33 Identities = 126/152 (83%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| ||||| ||| ||||||||| ||||| |||||||| Sbjct 170918 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 170977 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| ||||||||||||||||| || ||||||||||||||||||| ||| Sbjct 170978 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGG 171037 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 | || |||||||||| ||| || ||||| Sbjct 171038 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCA 171069 >seq149 Length=203194 Score = 114 bits (126), Expect = 1e-20 Identities = 118/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || ||| ||||||||| ||||| |||||||| Sbjct 6849 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6908 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| || || ||||||||||||||||||| ||| Sbjct 6909 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCCGGGGGG 6968 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA 41786 | | |||||| ||| ||| | || | ||||| Sbjct 6969 ATTCCCTCCTTATCC-TGAATCTTGGCCTTCA 6999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301838728800