Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq366 141 2e-28 seq1136 89.7 1e-12 >seq366 Length=3905163 Score = 141 bits (156), Expect = 2e-28 Identities = 234/333 (70%), Gaps = 11/333 (3%) Strand=Plus/Minus Query 320401 TTCGCCATGTTCCTGATGATAACACATGTCTTACGCCGAACGGGGGTGGTGCGATCGGCA 320460 || |||||||| | |||||| || || | ||| || || | |||||||||||| |||| Sbjct 3017198 TTGGCCATGTTGCGGATGATGACGCAGGCCTTGCGGCGGATGGGGGTGGTGCGGTCGGTC 3017139 Query 320461 AGCCCGCGGACGAGTAGCGGGGTCAGGATAGACAGGGTCTTCGCGTCAACCGACTGGACG 320520 || ||||||||||| || || |||||| |||||||| |||||| || ||||| ||| Sbjct 3017138 AGGCCGCGGACGAGCAGGGGCACCAGGATGGACAGGGTGCGCGCGTCCACAGACTGCACG 3017079 Query 320521 AACGTGGTCGCAGATAGGTTGTGGACACACTCGGGGACGTC-CTGAGGAGAACCAATACT 320579 ||||||||||| || || |||||||| || ||||| || || ||| || | || || | Sbjct 3017078 AACGTGGTCGCCGACAGCTTGTGGACGCAGTCGGGCACCTCGCTG-GGGGCGCCGATGCA 3017020 Query 320580 CTTCACGAGATGGGGAATGAAGGGTTCGATGTCTTTGTTATCAAT---TTGACAACACGC 320636 | || || || | |||||| || ||||| ||| | || || ||| Sbjct 3017019 GCGGATCAGGTGCGGCACGAAGGGCTCAATGTCGCGGTTGCCGATGGCGGCGCAGCACTT 3016960 Query 320637 GATAAGAGCCTTCGTGGCACTGTCCTTTACCAC---TTGCTTCAGGTCAATCATACAATC 320693 | | || || | ||||| | | || ||| |||||||||| | ||| || | Sbjct 3016959 GGTGAGCGCGTCGGTGGC---GGCGTTGCGCACGGTGGGCTTCAGGTCCACCATGCAGTT 3016903 Query 320694 TGTCACCACCGGTACAATTTCGGGAAGGTAGAC 320726 ||||| ||||| ||||| ||||| |||||||| Sbjct 3016902 GGTCACGACCGGCACAATCTCGGGCAGGTAGAC 3016870 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 319319 CCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGT 319378 |||||||||| ||||||||||| | | |||| |||| | | |||| ||| ||||| Sbjct 3019838 CCTCGAGGAAGCCGGGCTCGGGCAGCACCCACTTGGTGGTGGCGTCGGCCAGGTTGTAGT 3019779 Query 319379 AACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCA 319438 | || | ||||| |||| || ||| |||| |||||| || ||| ||||||||||| Sbjct 3019778 AGGCAGCGGCCTCGGGGCGCTGCTCCACAAACTTGGACAGGTTGCCCAGGTACTTCTTCA 3019719 Query 319439 GCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGT 319498 |||| | ||| ||||| ||||| || |||||| || ||||| ||||| || |||| Sbjct 3019718 GCTTGAAGTTGTCCTCGTAGTGGATGATGCTGGTGCACACGGCGTCCAGGAAGCCAGAGT 3019659 Query 319499 CGTGTGACACAATCACGC 319516 |||| ||||| | ||||| Sbjct 3019658 CGTGCGACACCACCACGC 3019641 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 318981 GTCAAGGGTCTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGT 319040 ||| |||| ||| ||| || |||| ||| |||||||| ||||| ||||||||||| || Sbjct 3020588 GTCCAGGGACTCGCGGTCCTCGCCGGTGGCGTAACGCCACTGGATGTACTGGTTGGGGGT 3020529 Query 319041 CATGTCAAGATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCAT 319100 |||||| || || | ||| ||||||||||| || ||||| |||||||| || | |||| Sbjct 3020528 CATGTCCAGGTGGTTCTCAATGTGGTGGAAGGCGTGCTGAGCCACGTAGGCCACGCGCAG 3020469 Query 319101 ATTTGGATGCTTCCAAAC 319118 || || |||||||| || Sbjct 3020468 GTTGGGGTGCTTCCACAC 3020451 >seq1136 Length=1242750 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1180290 GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1180349 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 1180350 CCCACTCTGGGC 1180361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057805757163980