Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1168 156 4e-33 seq12 136 4e-27 seq1204 131 2e-25 seq514 129 6e-25 seq534 104 2e-17 seq557 96.9 4e-15 >seq1168 Length=1683484 Score = 156 bits (172), Expect = 4e-33 Identities = 134/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 ||||| ||||| ||||| || ||| |||||| ||||||| |||||| |||| | || Sbjct 215795 GAGCGGCTGGTCGCCTTTGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCTTTCTGCTCC 215854 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || || ||||||||||| |||||||||||||||||||| || ||| ||||||||||||| Sbjct 215855 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATC 215914 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 || | |||||||| ||||| ||||||||| || |||||| || Sbjct 215915 TCGCGCGACGAGGGCCTGCACACCGACTTTGCGTGCCTGCTGTACA 215960 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 116680 CGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCG 116739 |||||||||||||||| || ||| | |||||||||||| |||||||| ||||| | Sbjct 215056 CGAGGAGGTGGACCTGGGCAGTGACGTCAAGGACTGGGAGCGCCTGAACGACGACGAGAG 215115 Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799 || || | |||| | |||||||| ||||||||| || ||||| || ||||| Sbjct 215116 GCACTTTGTGTCGCACATCCTGGCCTTCTTCGCCGCCTCTGATGGCATTGTGCTGGAGAA 215175 Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGG 116840 |||| | ||| ||| ||||| | ||||| |||||| Sbjct 215176 CCTGGGGGCGCGCTTCATGAAGGAGATTCAGGTCCCCGAGG 215216 >seq12 Length=2794402 Score = 136 bits (150), Expect = 4e-27 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || |||| ||| ||||| |||||||| Sbjct 2342178 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAG 2342237 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| |||||||| ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 2342238 GACGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 2342297 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 2342298 CGCCTGCGCGGCGGC 2342312 >seq1204 Length=1697657 Score = 131 bits (144), Expect = 2e-25 Identities = 110/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || ||||||| || ||||| |||||||| Sbjct 1370611 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAG 1370552 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| |||||||||||||||||||||| | |||||||| || ||| || Sbjct 1370551 GATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTG 1370492 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | || ||| Sbjct 1370491 CGCCTGCGTGGAGGC 1370477 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || ||||||| || ||||| |||||||| || | ||| Sbjct 1369964 GGCATCCCCCCCGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGC 1369905 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| | |||||||| || ||| ||||| || | Sbjct 1369904 ACCCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGT 1369845 Query 40912 GGCGGC 40917 || ||| Sbjct 1369844 GGAGGC 1369839 >seq514 Length=2321867 Score = 129 bits (142), Expect = 6e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| ||||||||| |||||||| |||| ||| Sbjct 1627083 GGCATCCCCCCTGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGC 1627142 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| | || ||||| || ||| ||||| || | Sbjct 1627143 ACCCTGGCCGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCGC 1627202 Query 40912 GGCGGC 40917 |||||| Sbjct 1627203 GGCGGC 1627208 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| ||||||||| |||||||| || | ||| Sbjct 1625424 GGCATCCCCCCTGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGC 1625483 Query 40852 ACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| |||||||||||||||||||| Sbjct 1625484 ACCCTGGCCGACTACAACATCCAGAAGG 1625511 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| | || |||| ||||||||| |||||||| |||| ||| Sbjct 1626266 GGCATCCCCCCTGACCAGCAGAGGCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGC 1626325 Query 40852 ACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| |||||||||||||||||||| Sbjct 1626326 ACCCTGGCCGACTACAACATCCAGAAGG 1626353 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| || ||||| |||||||| |||| ||| Sbjct 1624534 GGCATCCCCCCTGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGC 1624593 Query 40852 ACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| |||||||||||||||||||| Sbjct 1624594 ACCCTGGCCGACTACAACATCCAGAAGG 1624621 >seq534 Length=2359 Score = 104 bits (114), Expect = 2e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| |||||||||| || ||||||| || ||||| |||||||| Sbjct 1127 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAG 1186 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 |||| |||||| | ||||||||||||||| |||| Sbjct 1187 GACGGCCGCACCTTGGCCGACTACAACATCCAAAAGG 1223 >seq557 Length=1392758 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || ||||||| || ||||| |||||||| |||| ||| Sbjct 492994 GGCATCCCCCCCGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGTCGC 493053 Query 40852 ACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| |||||||||||||||||||| Sbjct 493054 ACCCTGGCCGACTACAACATCCAGAAGG 493081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210531436960