Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq12 111 1e-19 seq1204 107 1e-18 seq514 100 2e-16 seq534 86.0 4e-12 >seq12 Length=2794402 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||||||| | || || ||||| ||||||||||| | | Sbjct 2342311 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 2342252 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| ||||||||| ||||| || || |||||||||||| ||| Sbjct 2342251 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 2342192 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 2342191 ATGCCCTCCTTGTC 2342178 >seq1204 Length=1697657 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || ||||| ||||||||||||| | Sbjct 1370478 CCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1370537 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || |||||||||||||||||| ||| Sbjct 1370538 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCGGGGGGG 1370597 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 1370598 ATGCCCTCCTTGTC 1370611 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || ||||| ||||||||||||| | Sbjct 1369840 CCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1369899 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 || ||| | || |||| ||||||||| || || |||||||||||||||||| Sbjct 1369900 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCG 1369953 >seq514 Length=2321867 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||||||| | || || ||||| ||||||||||||| | Sbjct 1627207 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1627148 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 1627147 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTC 1627095 >seq534 Length=2359 Score = 86.0 bits (94), Expect = 4e-12 Identities = 78/96 (81%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAAT 34260 || || ||||||||||||| || | || ||| |||| |||| ||||||||| || || || Sbjct 1221 TTTTGGATGTTGTAGTCGGCCAAGGTG-CGGCCGTCCTCCAGCTGCTTGCCGGCAAAGAT 1163 Query 34261 GAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||||||||||||| ||| | || ||||||||| Sbjct 1162 GAGCCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 1127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323066700205760