Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 8e-16 seq1204 95.1 1e-14 >seq12 Length=2794402 Score = 98.7 bits (108), Expect = 8e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| ||||||||||| ||| ||| |||| ||| Sbjct 2342293 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCC 2342234 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || |||||||| |||| ||||| |||||||| || | |||||||||||| Sbjct 2342233 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 2342177 >seq1204 Length=1697657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 1370496 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCC 1370555 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||| || || | |||||| |||||||| || | |||||||||||| Sbjct 1370556 AGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 1370612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395068719038266