Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1168 114 1e-20 >seq1168 Length=1683484 Score = 114 bits (126), Expect = 1e-20 Identities = 130/172 (76%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT- 58021 || || ||| |||| |||| || ||| ||| || || || ||||| |||||| || Sbjct 215789 TTTGCTGAGCGGCTGGTCGCCTTTGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCTTTC 215848 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 ||| || | || ||| | ||||| |||||||| ||||||||||| || || |||||| Sbjct 215849 TGCTCCA-TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGA 215907 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 | | || |||||||||||||| || || || || ||||||||||| ||||| Sbjct 215908 GCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTTGCGTGCCTGCTGTAC 215959 Score = 102 bits (112), Expect = 7e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 22468 CTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATT 22527 ||| || |||| |||||||| ||| |||||||| ||| | || ||||| | || || Sbjct 610270 CTCACCCGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTT 610329 Query 22528 GTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCT 22587 ||| ||||| ||||| | ||| || ||||||||||| || |||| ||| |||||||| | Sbjct 610330 GTTGCCCAGGATCTGGGAGGTGGAGGCGGTCGGCATGGGGGCCACCAGCAGCGAGTTGCG 610389 Query 22588 CAAGCCGTGCT 22598 || ||| |||| Sbjct 610390 CACGCCATGCT 610400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445758899980320