Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1168 114 2e-20 >seq1168 Length=1683484 Score = 114 bits (126), Expect = 2e-20 Identities = 115/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTT 125485 ||||| || || ||| ||| |||||||||||||| ||||| | || ||| ||||||| Sbjct 215801 CTGGTCGCCTTTGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCTTTCTGC-TCCATCTT 215859 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||||||||||||||||| ||||||||||| || || | |||||| | || || || Sbjct 215860 CTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCG 215919 Query 125546 AGACGAGGGCCTACACTGTGACTTTGC 125572 ||||||||||| ||| |||||||| Sbjct 215920 CGACGAGGGCCTGCACACCGACTTTGC 215946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741046731678960