Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq366 123 4e-24 seq1274 114 2e-21 seq20 114 2e-21 seq1250 105 1e-18 seq825 89.7 8e-14 >seq366 Length=3905163 Score = 123 bits (136), Expect = 4e-24 Identities = 184/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 2021829 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCTGCCAT 2021888 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| |||||||| |||||||| || || || |||| || |||| Sbjct 2021889 CCGCCGTCTGGCTCGCCGTGGTGGCGTCAAGCGCATCAGCGGCCTGATCTACGAGGAGAC 2021948 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| | | ||| || || ||| ||||| Sbjct 2021949 CCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGTGACGCCGTCACCTACACCGA 2022008 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || || || | || || || || Sbjct 2022009 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 2022068 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 2022069 CCGCACCCTGTACGGCTTTGG 2022089 Score = 114 bits (126), Expect = 2e-21 Identities = 182/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1652582 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1652641 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || |||||||| || ||| || |||| || |||| Sbjct 1652642 CCGCCGTCTGGCGCGCCGTGGCGGCGTCAAGCGCATCAGTGGCCTGATCTACGAGGAGAC 1652701 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | ||| || || ||| ||||| Sbjct 1652702 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGTGACGCCGTCACCTACACCGA 1652761 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || || || | || || || || Sbjct 1652762 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 1652821 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 1652822 CCGCACCCTGTACGGCTTTGG 1652842 Score = 111 bits (122), Expect = 2e-20 Identities = 181/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1932337 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1932278 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || |||||||| || || || |||| || |||| Sbjct 1932277 CCGCCGCCTGGCGCGCCGTGGCGGCGTCAAGCGCATCAGCGGCCTGATCTACGAGGAGAC 1932218 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | ||||| || ||| ||||| Sbjct 1932217 CCGCGGCGTGCTCAAGGTGTTCCTTGAGAACGTGGTGCGCGATGCCGTCACCTACACCGA 1932158 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | ||| | || || || | || || || || Sbjct 1932157 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGATGTGGTGTACGCGCTCAAGCGCCAGGG 1932098 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 1932097 CCGCACCCTGTACGGCTTTGG 1932077 Score = 111 bits (122), Expect = 2e-20 Identities = 181/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || |||||||||||||| || Sbjct 2155445 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCAGCCAT 2155504 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || |||||||| |||||||| || || || |||| || |||| Sbjct 2155505 CCGCCGCCTGGCGCGCCGTGGTGGCGTCAAGCGCATCAGCGGCCTGATCTACGAGGAGAC 2155564 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || || || ||| ||||| Sbjct 2155565 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCCGTCACCTACACCGA 2155624 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || || || | || || || || Sbjct 2155625 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 2155684 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 2155685 CCGCACCCTGTACGGCTTTGG 2155705 Score = 105 bits (116), Expect = 1e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| || ||||| ||||||||||| ||||| || ||| Sbjct 1822546 GACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGTGGCGGCGTC 1822605 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || || |||| || |||| || | || | ||| | ||||| || Sbjct 1822606 AAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTTGAG 1822665 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| | | || || || ||| ||||||||||| || ||||| |||||| || Sbjct 1822666 AACGTGGTGCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCC 1822725 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | || | || || || | || || || ||||| | | || || ||||| Sbjct 1822726 TTTGACGTGGTGTACGCGCTCAAGCGCCAGGGCCGCACCCTGTACGGCTTTGG 1822778 Score = 102 bits (112), Expect = 1e-17 Identities = 179/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1674206 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1674147 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || |||||||| || || || |||| || |||| Sbjct 1674146 CCGCCGCCTGGCGCGCCGTGGCGGCGTCAAGCGCATCAGCGGCCTGATCTACGAGGAGAC 1674087 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || || || ||| ||||| Sbjct 1674086 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCCGTCACCTACACCGA 1674027 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || || || | || || || || Sbjct 1674026 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 1673967 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 1673966 CCGCACCCTGTACGGCTTTGG 1673946 >seq1274 Length=3854 Score = 114 bits (126), Expect = 2e-21 Identities = 182/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 3590 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 3531 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || |||||||| || || || |||| || |||| Sbjct 3530 CCGCCGCCTGGCGCGCCGTGGCGGCGTCAAGCGCATCAGCGGCCTGATCTACGAGGAGAC 3471 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | ||||| ||| ||| | | ||||| || ||| ||||| Sbjct 3470 CCGTGGCGTGCTCAAGGTGTTCCTTGAGAACGTGGTGCGCGATGCCGTCACCTACACCGA 3411 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | ||| | || || || | || || || || Sbjct 3410 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGATGTGGTGTACGCGCTCAAGCGCCAGGG 3351 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 3350 CCGCACCCTGTACGGCTTTGG 3330 >seq20 Length=4379 Score = 114 bits (126), Expect = 2e-21 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 433 CGCCAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 492 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || |||||||| || || || |||| || |||| Sbjct 493 CCGCCGCCTGGCTCGCCGTGGCGGCGTCAAGCGCATCAGCGGCCTGATCTACGAGGAGAC 552 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | ||| || || ||| ||||| Sbjct 553 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGTGACGCCGTCACCTACACCGA 612 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || ||||| | || || || || Sbjct 613 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTATGCGCTCAAGCGCCAGGG 672 Query 16672 CCG 16674 ||| Sbjct 673 CCG 675 >seq1250 Length=2573 Score = 105 bits (116), Expect = 1e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| || ||||| ||||||||||| ||||| || ||| Sbjct 2 GACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGTGGCGGCGTC 61 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || || |||| || |||| || | || | ||| | ||||| || Sbjct 62 AAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTTGAG 121 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| | | || || || ||| ||||||||||| || ||||| |||||| || Sbjct 122 AACGTGGTGCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCC 181 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | || | || || || | || || || ||||| | | || || ||||| Sbjct 182 TTTGACGTGGTGTACGCGCTCAAGCGCCAGGGCCGCACCCTGTACGGCTTTGG 234 >seq825 Length=862972 Score = 89.7 bits (98), Expect = 8e-14 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || ||||| || || ||||| ||||| || ||| Sbjct 522844 GCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATTCAGGGCATCACGAAGCCCGCCATC 522903 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || || || |||||||| || || || |||| || |||| Sbjct 522904 CGCCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACC 522963 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| | ||||| ||| ||| | | ||||| || ||| |||||| Sbjct 522964 CGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGATGCCGTCACCTACACCGAG 523023 Query 16613 CACGCTAAACGTAAGACTGTCACCTCC 16639 |||||| || ||||| |||||| || Sbjct 523024 CACGCTCGCCGCAAGACCGTCACCGCC 523050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073969342778