Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq1307 468 6e-127 seq1039 87.8 2e-12 >seq1307 Length=2189 Score = 468 bits (518), Expect = 6e-127 Identities = 517/689 (75%), Gaps = 0/689 (0%) Strand=Plus/Minus Query 138189 ATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCGTCTGGTAGGCATCCGTCCCTACAAC 138248 ||||| || |||||||| |||||||| || | ||| |||| || ||||| || ||| Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGTTCGGTAAAAATTCGTCCATATAAC 2130 Query 138249 GCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTG 138308 || || |||||||| | ||| || |||| ||||| || ||| | || |||||||| Sbjct 2129 GCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCCTTTA 2070 Query 138309 GGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTG 138368 |||||||| ||||||||||||| || || || || || ||||| ||||||||| | Sbjct 2069 GGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATTCATT 2010 Query 138369 TTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCA 138428 || ||| | || || |||||||||||||| | ||||| || ||||||||||| || || Sbjct 2009 TTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGTTGCC 1950 Query 138429 GGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTG 138488 ||| | ||||| | || | || ||||| ||||| ||||| || || ||||| || | Sbjct 1949 GGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACACGCTT 1890 Query 138489 TATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAA 138548 | ||||||||| || |||| || || || ||| | || || |||| |||||| Sbjct 1889 TTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAA 1830 Query 138549 ACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGT 138608 || |||||||||||||| || ||||||| |||||| ||||| ||||| | |||||| Sbjct 1829 ACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCA 1770 Query 138609 AATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGT 138668 || || |||||| | |||||||||||||| |||||||| || | ||||| |||| ||| Sbjct 1769 AACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGATGAGT 1710 Query 138669 AGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAA 138728 |||||| | | ||| | ||| | ||| |||| |||||||||||||| || |||||| Sbjct 1709 GCAATTGGTGTAGTAGGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAA 1650 Query 138729 ATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAAT 138788 ||||| || || ||||| ||||| || || || ||||| || || || |||||| | || Sbjct 1649 ATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTTTAAAC 1590 Query 138789 GAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCT 138848 |||||| | ||||| ||||||||| || ||||| ||||| ||||| | || || ||| Sbjct 1589 GAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTATTCCCT 1530 Query 138849 GAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 || || || || ||| | || |||||||| Sbjct 1529 GAGGAGGTTTTACCACGTGGAAACGCTCT 1501 >seq1039 Length=107091 Score = 87.8 bits (96), Expect = 2e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 119469 GTCGCCAAGTGGTAAGGCAGCGGGTTTTGGTCCCGCCATTCGTGGGTTCGAATCCT 119524 |||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 9678 GTCGCCAAGTGGTAAGGCTGCGGGTTTTGGTCCCGCCATTCGGAGGTTCGAATCCT 9733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627957434438400