Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1307 307 1e-78 >seq1307 Length=2189 Score = 307 bits (340), Expect = 1e-78 Identities = 499/718 (69%), Gaps = 29/718 (4%) Strand=Plus/Minus Query 172119 ATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAAC 172178 || ||||| |||||| | |||||||| ||||| | || || ||||| || ||| Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGTTCGGTAAAAATTCGTCCATATAAC 2130 Query 172179 GCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCT---TTCT-AATATATCC 172234 || | ||||||||||| ||| | |||||| | ||| |||| ||| ||||| Sbjct 2129 GCGATTGCATTCTCAGCTCCAATTTCTGTATTC----GTTTCTGTATTCTTAATTTATCC 2074 Query 172235 ATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAATCTTTCGTTA 172294 |||||||| | |||||||||| ||||| || || || || ||||| || || | Sbjct 2073 TTTAGGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATT 2014 Query 172295 TATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATGATGGGTGT 172354 ||||||||| | || || ||||| || ||| | || || || |||||||||||||| Sbjct 2013 CATTTTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGT 1954 Query 172355 AGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTACAGAACAC 172414 || ||| ||||||| | ||||||||| ||||| || || |||||||| || | ||||| Sbjct 1953 TGCCGGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACAC 1894 Query 172415 ATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGC 172474 | | |||||| ||| ||| ||| | || ||| | || Sbjct 1893 GCTTTTTGAAGATGG------------TGATGGTG-----CAAAC----ACATTCCGTGC 1855 Query 172475 ATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCTAACAGATTCTGGTC 172534 || | || ||||| | |||||||||||| ||| |||| || ||| | |||||||| Sbjct 1854 GTTTAACCCAACACAAGCTGAAGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTC 1795 Query 172535 ACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGT 172594 ||| || |||||| |||| |||||||||||| | | ||||||||| ||||| | || || Sbjct 1794 ACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGT 1735 Query 172595 ACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAG 172654 || || | ||| | |||| | || ||| | |||||| | || | ||| | | Sbjct 1734 TCCAGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTAGGTTTAGCTTTAAACTTACG 1675 Query 172655 AGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTT 172714 || || || || || || ||||| || | || || |||||||| ||||||||||| || Sbjct 1674 TGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTT 1615 Query 172715 CTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCA 172774 ||| || || || |||||| | || |||||||| | || |||||| | || ||||| Sbjct 1614 CTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCA 1555 Query 172775 ACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 || ||||| || | || ||||| || || || || ||||| || ||||| || ||| Sbjct 1554 GCCTCATGAAAAACTAGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAA 1497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570259205227440