Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1168 116 3e-21 seq514 116 3e-21 seq12 109 5e-19 seq1204 100 3e-16 seq534 89.7 5e-13 >seq1168 Length=1683484 Score = 116 bits (128), Expect = 3e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 || || ||||| |||| |||||||| ||||||||| |||| || || ||| ||| Sbjct 215789 TTTGCTGAGCGGCTGGTCGCCTTTGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCTTTC 215848 Query 46207 GCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAG 46266 | ||||||| | |||| | ||| ||||||||||||| || || ||||||| Sbjct 215849 TGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAG 215908 Query 46267 CTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 || || |||||||||||||||||||| || ||||||||||| || Sbjct 215909 CTCATCTCGCGCGACGAGGGCCTGCACACCGACTTTGCGTGCCT 215952 >seq514 Length=2321867 Score = 116 bits (128), Expect = 3e-21 Identities = 102/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | |||||||||||| || |||||||| ||| Sbjct 1627208 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 1627149 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 1627148 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGGGG 1627089 Query 131127 GATTCCT 131133 ||| ||| Sbjct 1627088 GATGCCT 1627082 >seq12 Length=2794402 Score = 109 bits (120), Expect = 5e-19 Identities = 109/140 (78%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| Sbjct 2342317 ATGATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAG 2342258 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || || |||||| |||||| ||||||||||| ||| |||| | ||||||||||| Sbjct 2342257 TCAGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCG 2342198 Query 131122 GGAGGGATTCCTTCTTTGTC 131141 || ||||| || || ||||| Sbjct 2342197 GGGGGGATGCCCTCCTTGTC 2342178 >seq1204 Length=1697657 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| |||||||| | || | ||||||||||| || |||||||| ||| Sbjct 1370477 GCCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 1370536 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 1370537 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCGGGGGG 1370596 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 1370597 GATGCCCTCCTTGTC 1370611 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| |||||||| | || | ||||||||||| || |||||||| ||| Sbjct 1369839 GCCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 1369898 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 1369899 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCGGGGGG 1369958 Query 131127 GATTCCT 131133 ||| ||| Sbjct 1369959 GATGCCT 1369965 >seq534 Length=2359 Score = 89.7 bits (98), Expect = 5e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 ||||||| |||||||| ||| || |||||| |||||| ||||||||||| || ||| Sbjct 1223 CCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 1164 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 | | |||||||||||||| ||||| || || ||||| Sbjct 1163 TGAGCCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 1127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472004858384640