Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1204 102 7e-17 seq12 89.7 4e-13 seq514 87.8 1e-12 seq534 86.0 5e-12 >seq1204 Length=1697657 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| |||||||| |||||||| || ||||||||||||||| Sbjct 1370478 CCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1370537 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||| || ||||| ||| | || |||||||| ||||| || Sbjct 1370538 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCGGGGGGG 1370597 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 1370598 ATGCCCTCCTTGTC 1370611 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| |||||||| |||||||| || ||||||||||||||| Sbjct 1369840 CCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1369899 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | ||| | | ||||||| || ||||| ||| | || |||||||| ||||| Sbjct 1369900 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTC 1369952 >seq12 Length=2794402 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 2342311 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 2342252 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||||| || ||||| || | || || ||||| ||||| || Sbjct 2342251 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 2342192 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 2342191 ATGCCCTCCTTGTC 2342178 >seq514 Length=2321867 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| || |||||||| || ||||||||||||||| Sbjct 1627207 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1627148 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | ||| | ||||||||| || |||||||| | || || ||||| ||||| Sbjct 1627147 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTC 1627095 >seq534 Length=2359 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 16746 CCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAA 16805 ||||||| |||||||||||||||| ||| | ||||||||| || ||||| ||| | | Sbjct 1223 CCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 1164 Query 16806 TAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 | |||||||| |||||| || | |||||| ||||| Sbjct 1163 TGAGCCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 1127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405081354784540