Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq1307 426 2e-114 >seq1307 Length=2189 Score = 426 bits (472), Expect = 2e-114 Identities = 510/690 (74%), Gaps = 2/690 (0%) Strand=Plus/Minus Query 167624 ATAGGATTTATGCTTCGGCAATTTGAGATAAGTAGACTAGTAGGTATCCGTCCTTACAAT 167683 || || ||||||||||| || ||||| || | ||| || ||||| || || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGTTCGGTAAAAATTCGTCCATATAAC 2130 Query 167684 GCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTC 167743 |||||||| || || | ||| ||| |||| || || ||||| || | || |||||| | Sbjct 2129 GCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCCTTTA 2070 Query 167744 GGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTA 167803 || || || |||||||||||||||| || || ||||| || || || ||||| | Sbjct 2069 GGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATTCATT 2010 Query 167804 CTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCT 167863 ||||| | || || |||||||||||||| | |||||||||||||||||||| ||||| Sbjct 2009 TTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGTTGCC 1950 Query 167864 GGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTG 167923 ||| | || || | ||||| |||| |||||| || |||| || || || || || || Sbjct 1949 GGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACACGCTT 1890 Query 167924 TATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAA 167983 | |||||||||||| |||||||| ||| || ||| | | || || | || ||| Sbjct 1889 TTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAA 1830 Query 167984 ACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGC 168043 |||||||| ||||| || || ||||| |||||||| |||||||||||| | ||||| Sbjct 1829 ACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCA 1770 Query 168044 AATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGT 168103 || || |||||||| |||||||||||||| || ||||| || | || ||||||| ||| Sbjct 1769 AACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGATGAGT 1710 Query 168104 TCTATTGGTATCATCGGTCTCGCACTTAATCTT-CGTGCTTATGACTTTGTGTCTCAGGA 168162 | |||||| | | ||| | || |||| ||| ||||| ||||| || || || || || Sbjct 1709 GCAATTGGTGTAGTAGGTTTAGCT-TTAAACTTACGTGCGTATGATTTCGTTTCACAAGA 1651 Query 168163 AGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAA 168222 | || | || || || || || |||||||||||||||||||| ||||| || || | || Sbjct 1650 AATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTTTAAA 1591 Query 168223 TGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAAACTTTGTATTCCC 168282 ||||| | ||||| ||||||||| | ||| || || |||||||| | |||||||| Sbjct 1590 CGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTATTCCC 1531 Query 168283 AGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || || || ||| | || |||||||| Sbjct 1530 TGAGGAGGTTTTACCACGTGGAAACGCTCT 1501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567222456321600