Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1204 89.7 4e-13 seq12 86.0 5e-12 >seq1204 Length=1697657 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 || ||||||||||| || || ||||| || || || || || ||||||||||| ||| | Sbjct 1370614 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTG 1370555 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||| ||||||| | |||| |||||||| || || || || || | || | || Sbjct 1370554 GAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTG 1370495 Query 22429 TTGCGATTGCGCGGAGG 22445 |||| |||| ||||| Sbjct 1370494 CTGCGCCTGCGTGGAGG 1370478 >seq12 Length=2794402 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 || ||||||||||| || || ||||| || || || || || || |||||||| ||| | Sbjct 2342175 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTG 2342234 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||| ||||||| | | || |||||||| || || || |||||| | || | || Sbjct 2342235 GAGGACGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 2342294 Query 22429 TTGCGATTGCGCGGAGG 22445 |||| ||||||| || Sbjct 2342295 CTGCGCCTGCGCGGCGG 2342311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419721114624490