Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq366 134 3e-26 seq825 107 4e-18 seq1136 95.1 2e-14 seq1168 89.7 1e-12 >seq366 Length=3905163 Score = 134 bits (148), Expect = 3e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 280251 GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATC 280310 || |||||||| |||||| |||| |||| ||||| ||||||||||| ||||||||||| Sbjct 3020451 GTGTGGAAGCACCCCAACCTGCGCGTGGCCTACGTGGCTCAGCACGCCTTCCACCACATT 3020510 Query 280311 GAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGCAAGTGGGCAG 280370 |||||||||||||||||||| || ||||| ||||| |||||||| || || | || || Sbjct 3020511 GAGAACCACCTGGACATGACCCCCAACCAGTACATCCAGTGGCGTTACGCCACCGGCGAG 3020570 Query 280371 GATCTGGAGTCGGTGGA 280387 || | ||||| |||| Sbjct 3020571 GACCGCGAGTCCCTGGA 3020587 Score = 129 bits (142), Expect = 1e-24 Identities = 180/250 (72%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 278721 GCTCTCATCAAGTGTTGTGCGTCCATCGGCAACAAGGACATCGAACCATTCATTGCCCAT 278780 || |||| |||||| || || ||||||||||| ||||| || || ||| | | || Sbjct 3016951 GCGCTCACCAAGTGCTGCGCCGCCATCGGCAACCGCGACATTGAGCCCTTCGTGCCGCAC 3017010 Query 278781 CTGATC-GCTGCAATCTCTGATAGCAGTCAGGTCCCGGAATGCGTCCATCAGCTATCTGC 278839 |||||| |||||| || | ||| |||| || || |||||||| |||| || || Sbjct 3017011 CTGATCCGCTGCA-TCGGCGCCCCCAGCGAGGTGCCCGACTGCGTCCACAAGCTGTCGGC 3017069 Query 278840 AACCACATTCGTCCAGACCGTTGATGCTCGCACTCTTGCTGTCCTGGTACCTCTGCTATG 278899 ||||| ||||| ||| | || || || ||||| || | ||||||| || ||||| Sbjct 3017070 GACCACGTTCGTGCAGTCTGTGGACGCGCGCACCCTGTCCATCCTGGTGCCCCTGCTCGT 3017129 Query 278900 CCGTGGTATTGTGGACCGCACTACCGTGGTGCGCCGCAAGACCTGTGTCATCATCAACAA 278959 ||| || | |||||||| ||| | ||||||||| |||| ||||||||| ||| Sbjct 3017130 CCGCGGCCTGACCGACCGCACCACCCCCATCCGCCGCAAGGCCTGCGTCATCATCCGCAA 3017189 Query 278960 CATGGCCAAG 278969 |||||||||| Sbjct 3017190 CATGGCCAAG 3017199 Score = 127 bits (140), Expect = 4e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 279864 GTCTCTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAA 279923 || || ||||||||||||||||| || ||||||||| | |||||| ||||| ||| | Sbjct 3019649 GTGTCGCACGACTCTGGCTTCCTGGACGCCGTGTGCACCAGCATCATCCACTACGAGGAC 3019708 Query 279924 AATCTGAAGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAG 279983 || | ||||| ||| || | ||||||||||| || |||| ||||||| ||| Sbjct 3019709 AACTTCAAGCTGAAGAAGTACCTGGGCAACCTGTCCAAGTTTGTGGAGCAGCGCCCCGAG 3019768 Query 279984 GCGGCCGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGG 280043 || || |||||||| ||||| ||||||||| ||||||||| | || ||||| || Sbjct 3019769 GCCGCTGCCTACTACAACCTGGCCGACGCCACCACCAAGTGGGTGCTGCCCGAGCCCGGC 3019828 Query 280044 TTTCTGGAGG 280053 || || |||| Sbjct 3019829 TTCCTCGAGG 3019838 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || ||||| || ||||| ||||||||||| || || || | || || || ||||||| Sbjct 3021429 ATCCGCGGCCTGTCTGGTGGCCAGAAGGTGAAGCTGGTGCTGGGTGCCGCCATGTGGCAG 3021488 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 || || ||| | | || || |||||||| |||||||| |||||||||||| ||||||| Sbjct 3021489 CAGCCCCACATCCTGGTGCTGGACGAGCCCACCAACTACCTGGACCGCGAGTCCCTGGGC 3021548 Query 280833 GC 280834 || Sbjct 3021549 GC 3021550 Score = 93.3 bits (102), Expect = 9e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 279711 GGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTA 279770 ||||| |||||||||||||||||||| | |||||||| || || ||||| || | Sbjct 3019298 GGTGGCTGGAAGATGAAGCTGGCCCTGGCGCGCGCCATGCTGATGAACGCCGACATCATG 3019357 Query 279771 CTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811 ||||| |||||||| ||||||||| ||||| |||||||| Sbjct 3019358 CTGCTGGATGAGCCCACCAACCACCTGGACGTGACCAACGT 3019398 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| || ||||| || || || ||||| ||||| ||||| ||| Sbjct 3018239 GGCGAGGACCTGTGCAACTGCGAGTTCTCCCTGGCCTACGGTGGCAAGATCCTGCTGAAC 3018298 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 ||||||| || | ||||| ||| | || || || || ||| ||||| || || Sbjct 3018299 AACGCCCGCCTGCACCTGAAGCGCGGCCAGCGCTACGGCCTGTGCGGCCCCAACGGCGCC 3018358 Query 279465 GGTAAGAGCACTCTAATGCGCGCCAT 279490 || ||| ||| || ||||||||||| Sbjct 3018359 GGCAAGTCCACCCTCATGCGCGCCAT 3018384 >seq825 Length=862972 Score = 107 bits (118), Expect = 4e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 280203 ACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCAT 280262 || || ||||| | ||||| |||||||| | | || ||||| ||| |||||||| Sbjct 530177 ACGCTCATCAAGATGCTGACGGGCGAGACGCTGCCCGACGAGGGCAGCGTGTGGAAGCAC 530118 Query 280263 CCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTG 280322 |||||| ||||| | || ||||| || |||||||| ||||||||| | ||| | |||||| Sbjct 530117 CCCAACCTGCGGCTCGCCTACGTGGCGCAGCACGCCTTCCACCACGTGGAGCAGCACCTG 530058 Query 280323 GACATGACTCCTAACCAATACATTCAGTGGCG 280354 |||||||| || || ||||| |||||| Sbjct 530057 GACATGACGCCCTCGCAGTACATCTGGTGGCG 530026 >seq1136 Length=1242750 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1180290 GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1180349 Query 142564 CCCAC 142568 ||||| Sbjct 1180350 CCCAC 1180354 >seq1168 Length=1683484 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 |||||| ||||||||||| ||||| ||||||||| | ||||| ||||| | || Sbjct 215935 GTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 215876 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 || ||| ||||||||||||| | ||| || || || ||||| | | ||||| || || Sbjct 215875 GCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCCTCCACGCA 215816 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAA 251990 | | || || || ||||||||||| Sbjct 215815 GGCAAAGGCGACCAGCCGCTCAGCAAA 215789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027819074311986