Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015-
11-03] 1,346 sequences; 56,992,954 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq12 246 6e-60
seq366 165 2e-35
seq1136 111 3e-19
seq825 111 3e-19
seq1168 107 4e-18
>seq12
Length=2794402
Score = 246 bits (272), Expect = 6e-60
Identities = 220/276 (80%), Gaps = 0/276 (0%)
Strand=Plus/Plus
Query 173185 CTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTCTATGGCGGTGTCCAGCGGTTCAT 173244
|||||| || ||||| || |||||||||||| |||| |||||| ||| || |||||
Sbjct 1645101 CTACGGCACGCACGTGCTGCTGGAATGCGCGCGGCTGTATGGCAAGATCCGCCGCTTCAT 1645160
Query 173245 CAATGTGTCTACCGACGAAGTATACGGCGAGAGCAGTCTGGGCAAAAAAGAAGGCCTCGA 173304
||| || || |||||||| || |||||||||||||| |||||||| | || ||||| |
Sbjct 1645161 CAACGTCTCCACCGACGAGGTGTACGGCGAGAGCAGCCTGGGCAAGACCGAGGGCCTGAA 1645220
Query 173305 TGAACACTCGTCCCTCGAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAAT 173364
|| ||||| | || ||||| || ||||| || | || |||||||| || ||||| ||
Sbjct 1645221 GGAGCACTCCCCGCTGGAGCCCACCAACCCCTACTCCGCGGCCAAGGCGGGCGCCGAGAT 1645280
Query 173365 GATGGCACGTGCATATCACACATCGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAA 173424
|||||| || || || ||||| || |||||||| || ||||||||||| |||||||||||
Sbjct 1645281 GATGGCGCGCGCGTACCACACCTCATACAAGCTGCCCGTCATCGTGACCCGCGGCAACAA 1645340
Query 173425 TGTGTATGGCCCGCATCAGTTCCCCGAAAAAATGAT 173460
||||| |||||||| |||||||| || || |||||
Sbjct 1645341 CGTGTACGGCCCGCACCAGTTCCCGGAGAAGATGAT 1645376
Score = 127 bits (140), Expect = 4e-24
Identities = 117/148 (79%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 173035 TTTCAAGTTCGTCAAGGGAGATATTCAATCTACTGATCTCCTGGCGCACGTCCTGAAGCA 173094
|| || |||| ||||||| || || || || |||| ||| | | |||| ||||| ||||
Sbjct 1644733 TTGCAGGTTCATCAAGGGTGACATCCAGTCGGCTGACCTCATCGTGCACATCCTGGAGCA 1644792
Query 173095 GGAAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGG 173154
||| | |||||||| || ||||||||||| || ||||| || ||||||||| || ||
Sbjct 1644793 GGAGCAGATTGACACCATCATGCACTTTGCGGCCCAGACGCACGTGGACAACAGCTTTGG 1644852
Query 173155 TAACTCGCTGGCATTTACCATGAACAAC 173182
|||||| ||||||| ||||||||||||
Sbjct 1644853 CAACTCGATGGCATTCACCATGAACAAC 1644880
Score = 107 bits (118), Expect = 4e-18
Identities = 103/132 (78%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 173461 CCCAAAATTTATTCTTCGCGCAACCCGTGGCCTGGACCTCCCCATCCACGGGGACGGCGG 173520
||| || || | || ||||| | ||| |||||||| || ||||||||||| ||||||
Sbjct 1645584 CCCCAAGTTCACCCTGCGCGCCAACCGCGGCCTGGATCTGCCCATCCACGGCGACGGCCT 1645643
Query 173521 GGCTTTGCGGTCGTATTTGTATGTTGATGACGTGGCAGAGGCTTACATTACTATTTTGCT 173580
|||| |||||||||| ||||||| || || ||||| || || ||||| || | ||||
Sbjct 1645644 GGCTGTGCGGTCGTACCTGTATGTGGAGGATGTGGCTGACGCGTACATCACCGTGCTGCT 1645703
Query 173581 CAAGGGCAATGT 173592
||||||||| ||
Sbjct 1645704 CAAGGGCAAGGT 1645715
Score = 87.8 bits (96), Expect = 3e-12
Identities = 68/81 (84%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 172962 AGGTGGTGGTGCTCGACAAGATGGACTACTGCGCGACCCTGAACAACCTGGCAACAGTTC 173021
||||||| || || |||||| | ||||||||||| ||||| |||||||||||| |||| |
Sbjct 1644523 AGGTGGTCGTTCTGGACAAGCTCGACTACTGCGCCACCCTCAACAACCTGGCAGCAGTGC 1644582
Query 173022 GAGATGCTCCCAATTTCAAGT 173042
| |||| ||||| |||||||
Sbjct 1644583 GCAATGCACCCAACTTCAAGT 1644603
Score = 87.8 bits (96), Expect = 3e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 173740 CGACAAAAAGCTTCTCGACCTCGGCTGGCAGGAGAAAACCACATGGGAGGATGGCCTTAA 173799
|||||| ||||| || || || |||||||||||||| ||||| |||||||| ||||| ||
Sbjct 1646253 CGACAAGAAGCTGCTGGAGCTGGGCTGGCAGGAGAACACCACCTGGGAGGAGGGCCTGAA 1646312
Query 173800 GCAGACTGTGGGTTGGTACCTTCAGCATGCCACACG 173835
| |||| | | |||||||| |||| ||||| ||
Sbjct 1646313 GAAGACCATTGACTGGTACCTCAAGCACGCCACCCG 1646348
>seq366
Length=3905163
Score = 165 bits (182), Expect = 2e-35
Identities = 125/146 (86%), Gaps = 1/146 (1%)
Strand=Plus/Minus
Query 224954 GACTCCAGGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCC 225013
||||| |||||| ||| | ||| || |||||||||||||||||||||||||||||||||
Sbjct 3020581 GACTCGCGGTCCTCGCCGGTGGCGTAACGCCACTGGATGTACTGGTTGGGGGTCATGTCC 3020522
Query 225014 AGGTGGTTCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGA 225073
|||||||||||||| |||||||| || ||||| || ||||| |||| ||||| ||||||
Sbjct 3020521 AGGTGGTTCTCAATGTGGTGGAAGGCGTGCTGAGCCACGTAGGCCACGCGCAGGTTGGGG 3020462
Query 225074 TGCTTCCACACAGAGCCCCGAGTCGG 225099
||||||||||| || || || ||||
Sbjct 3020461 TGCTTCCACAC-CAGGCCAGACTCGG 3020437
Score = 136 bits (150), Expect = 7e-27
Identities = 171/235 (73%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 226366 CATGTTGTTGATAATCACACAGGTCTTGCGCTTCACCACGGTGGTGCGCTCCGCGAGACC 226425
||||||| ||| || || |||| |||||| | ||||||||| || | || ||
Sbjct 3017193 CATGTTGCGGATGATGACGCAGGCCTTGCGGCGGATGGGGGTGGTGCGGTCGGTCAGGCC 3017134
Query 226426 GCGGCAGATGAGGGGCACGAGCACGGCAAGGGTCCGGGCATCCACGGTCTGGACAAAAGT 226485
|||| || |||||||| || | || ||||| || || ||||| | ||| || || ||
Sbjct 3017133 GCGGACGAGCAGGGGCACCAGGATGGACAGGGTGCGCGCGTCCACAGACTGCACGAACGT 3017074
Query 226486 GGTCGCGGACAGCTTGTGGACGCACTCGGGGACCTGGCTCGTGTCGGAAATAGACTCGAT 226545
|||||| ||||||||||||||||| ||||| |||| ||| | | || || | |||
Sbjct 3017073 GGTCGCCGACAGCTTGTGGACGCAGTCGGGCACCTCGCTGGGGGCGCCGATGCAGCGGAT 3017014
Query 226546 GAGGTGGGGCACAAAGGGGTCAATGTCCTTGTTGCCAATGGACTTGCAGCACATG 226600
||||| ||||| ||||| |||||||| |||||| |||| ||||||| ||
Sbjct 3017013 CAGGTGCGGCACGAAGGGCTCAATGTCGCGGTTGCCGATGGCGGCGCAGCACTTG 3016959
Score = 136 bits (150), Expect = 7e-27
Identities = 144/190 (76%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 225282 CCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCAGGTCGTAGT 225341
|||| ||||| ||||||||||| | | |||||||||| ||||| ||||| |||||
Sbjct 3019838 CCTCGAGGAAGCCGGGCTCGGGCAGCACCCACTTGGTGGTGGCGTCGGCCAGGTTGTAGT 3019779
Query 225342 AAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGTGCTTCGTGA 225401
| | || |||||||| |||| |||| || |||||||| || |||| |||| | |
Sbjct 3019778 AGGCAGCGGCCTCGGGGCGCTGCTCCACAAACTTGGACAGGTTGCCCAGGTACTTCTTCA 3019719
Query 225402 GCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGT 225461
|||||| ||| | |||||| || | || | |||||| ||||| |||||||||||||
Sbjct 3019718 GCTTGAAGTTGTCCTCGTAGTGGATGATGCTGGTGCACACGGCGTCCAGGAAGCCAGAGT 3019659
Query 225462 CGTGGGACAC 225471
|||| |||||
Sbjct 3019658 CGTGCGACAC 3019649
Score = 131 bits (144), Expect = 3e-25
Identities = 113/140 (81%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 225857 AGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATG 225916
||||| |||||| ||||||||||| ||| |||||||| | | |||||||| | |
Sbjct 3018372 AGGGTGGACTTGCCGGCGCCGTTGGGGCCGCACAGGCCGTAGCGCTGGCCGCGCTTCAGG 3018313
Query 225917 TTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCG 225976
| ||||| | | |||||| |||||||||||||| ||||| |||||||||||||| | |
Sbjct 3018312 TGCAGGCGGGCGTTGTTCAGCAGGATCTTGCCACCGTAGGCCAGGGAGAACTCGCAGTTG 3018253
Query 225977 CACAGGTCCTCACCCTCCTC 225996
||||||||||| ||||||||
Sbjct 3018252 CACAGGTCCTCGCCCTCCTC 3018233
Score = 123 bits (136), Expect = 5e-23
Identities = 127/166 (77%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 224462 ACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAGCGACTCGCGGTCA 224521
|| || ||||||||| | || | ||| || | | ||||| || |||||||||||
Sbjct 3021589 ACCACGCCGCCGCCGTACTCCTTGATGGCCGAGGCCATGGCGCCCAGGGACTCGCGGTCC 3021530
Query 224522 AGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCACAGGGCTGCACCA 224581
||| |||| || ||||| ||||| | | | |||||| |||||||| ||| |||||
Sbjct 3021529 AGGTAGTTGGTGGGCTCGTCCAGCACCAGGATGTGGGGCTGCTGCCACATGGCGGCACCC 3021470
Query 224582 ACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCG 224627
| |||||||||||||||||| || ||||| |||||||||||| |||
Sbjct 3021469 AGCACCAGCTTCACCTTCTGGCCACCAGACAGGCCGCGGATCTGCG 3021424
Score = 105 bits (116), Expect = 1e-17
Identities = 138/188 (73%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 224734 GTCAATGTCGGCAAGCAGCTTCTGGAAACCGAATTCCTCGAGCTTCTCGCGGACCATCCA 224793
||| ||||||| |||| ||||||||| || | ||||||||| |||||| || |||
Sbjct 3021002 GTCGATGTCGGTGAGCATCTTCTGGAAGCCCATCTCCTCGAGCCGGTCGCGGGTCAGCCA 3020943
Query 224794 GGAAGCAGACTCGTCGTTCTTCCAGAACACCTCATACTCGTAGGTGCGCTTGAACTTGCG 224853
||| | | | ||| |||||| |||||| ||||||||| |||||| ||||||
Sbjct 3020942 GGAGGTCTCCACCTCGCCCTTCCACTGCACCTCGTACTCGTAGCCGCGCTTCTGCTTGCG 3020883
Query 224854 GCGG-CCACCA--ATACGGTCCAGGCGCTTCTTGACGCCGTCCACTACCTTGATTTCGTA 224910
|||| ||| || | ||| ||||||| ||||||||||| ||||||| ||||
Sbjct 3020882 GCGGCCCAGCAGCTTCTCCACCACGCGCTTC---ACGCCGTCCACCACCTTGACCTCGTT 3020826
Query 224911 CATCTTCT 224918
||||||||
Sbjct 3020825 CATCTTCT 3020818
>seq1136
Length=1242750
Score = 111 bits (122), Expect = 3e-19
Identities = 72/78 (92%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1180290 GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1180349
Query 84516 CCCACATCGGGCAGGTCG 84533
||||| || || |||||
Sbjct 1180350 CCCAC-TCTGGGCGGTCG 1180366
>seq825
Length=862972
Score = 111 bits (122), Expect = 3e-19
Identities = 119/155 (77%), Gaps = 2/155 (1%)
Strand=Plus/Plus
Query 224979 ACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAG 225038
|||||||| ||||||||| ||| |||||||||||||| | ||| | |||||||| |
Sbjct 530024 ACCGCCACCAGATGTACTGCGAGGGCGTCATGTCCAGGTGCTGCTCCACGTGGTGGAAGG 530083
Query 225039 CATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC- 225097
| ||||| || ||||| || | |||| |||||| ||||||||||| | ||| |||
Sbjct 530084 CGTGCTGCGCCACGTAGGCGAGCCGCAGGTTGGGGTGCTTCCACAC-GCTGCCCTCGTCG 530142
Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGT 225132
|| | | |||||| || || | ||||||||||||
Sbjct 530143 GGCAGCGTCTCGCCCGTCAGCATCTTGATGAGCGT 530177
>seq1168
Length=1683484
Score = 107 bits (118), Expect = 4e-18
Identities = 115/150 (77%), Gaps = 4/150 (3%)
Strand=Plus/Minus
Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312
||| |||||||||||||| ||||| ||||||||| || || ||||||||||| ||
Sbjct 215935 GTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 215876
Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCTCCACG 10370
|| || |||||||| |||| |||||| || || ||||| ||||| |||||||||
Sbjct 215875 GCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCCGAGAA--GAAGATGCCCTCCACG 215818
Query 10371 CACACCCAGGCGACGAGGCGCTCTGCGAAG 10400
|| | ||||||| || ||||| || |||
Sbjct 215817 CAGGCAAAGGCGACCAGCCGCTCAGCAAAG 215788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921606893703120
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