Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq12 246 6e-60 seq366 165 2e-35 seq1136 111 3e-19 seq825 111 3e-19 seq1168 107 4e-18 >seq12 Length=2794402 Score = 246 bits (272), Expect = 6e-60 Identities = 220/276 (80%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 173185 CTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTCTATGGCGGTGTCCAGCGGTTCAT 173244 |||||| || ||||| || |||||||||||| |||| |||||| ||| || ||||| Sbjct 1645101 CTACGGCACGCACGTGCTGCTGGAATGCGCGCGGCTGTATGGCAAGATCCGCCGCTTCAT 1645160 Query 173245 CAATGTGTCTACCGACGAAGTATACGGCGAGAGCAGTCTGGGCAAAAAAGAAGGCCTCGA 173304 ||| || || |||||||| || |||||||||||||| |||||||| | || ||||| | Sbjct 1645161 CAACGTCTCCACCGACGAGGTGTACGGCGAGAGCAGCCTGGGCAAGACCGAGGGCCTGAA 1645220 Query 173305 TGAACACTCGTCCCTCGAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAAT 173364 || ||||| | || ||||| || ||||| || | || |||||||| || ||||| || Sbjct 1645221 GGAGCACTCCCCGCTGGAGCCCACCAACCCCTACTCCGCGGCCAAGGCGGGCGCCGAGAT 1645280 Query 173365 GATGGCACGTGCATATCACACATCGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAA 173424 |||||| || || || ||||| || |||||||| || ||||||||||| ||||||||||| Sbjct 1645281 GATGGCGCGCGCGTACCACACCTCATACAAGCTGCCCGTCATCGTGACCCGCGGCAACAA 1645340 Query 173425 TGTGTATGGCCCGCATCAGTTCCCCGAAAAAATGAT 173460 ||||| |||||||| |||||||| || || ||||| Sbjct 1645341 CGTGTACGGCCCGCACCAGTTCCCGGAGAAGATGAT 1645376 Score = 127 bits (140), Expect = 4e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 173035 TTTCAAGTTCGTCAAGGGAGATATTCAATCTACTGATCTCCTGGCGCACGTCCTGAAGCA 173094 || || |||| ||||||| || || || || |||| ||| | | |||| ||||| |||| Sbjct 1644733 TTGCAGGTTCATCAAGGGTGACATCCAGTCGGCTGACCTCATCGTGCACATCCTGGAGCA 1644792 Query 173095 GGAAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGG 173154 ||| | |||||||| || ||||||||||| || ||||| || ||||||||| || || Sbjct 1644793 GGAGCAGATTGACACCATCATGCACTTTGCGGCCCAGACGCACGTGGACAACAGCTTTGG 1644852 Query 173155 TAACTCGCTGGCATTTACCATGAACAAC 173182 |||||| ||||||| |||||||||||| Sbjct 1644853 CAACTCGATGGCATTCACCATGAACAAC 1644880 Score = 107 bits (118), Expect = 4e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 173461 CCCAAAATTTATTCTTCGCGCAACCCGTGGCCTGGACCTCCCCATCCACGGGGACGGCGG 173520 ||| || || | || ||||| | ||| |||||||| || ||||||||||| |||||| Sbjct 1645584 CCCCAAGTTCACCCTGCGCGCCAACCGCGGCCTGGATCTGCCCATCCACGGCGACGGCCT 1645643 Query 173521 GGCTTTGCGGTCGTATTTGTATGTTGATGACGTGGCAGAGGCTTACATTACTATTTTGCT 173580 |||| |||||||||| ||||||| || || ||||| || || ||||| || | |||| Sbjct 1645644 GGCTGTGCGGTCGTACCTGTATGTGGAGGATGTGGCTGACGCGTACATCACCGTGCTGCT 1645703 Query 173581 CAAGGGCAATGT 173592 ||||||||| || Sbjct 1645704 CAAGGGCAAGGT 1645715 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 172962 AGGTGGTGGTGCTCGACAAGATGGACTACTGCGCGACCCTGAACAACCTGGCAACAGTTC 173021 ||||||| || || |||||| | ||||||||||| ||||| |||||||||||| |||| | Sbjct 1644523 AGGTGGTCGTTCTGGACAAGCTCGACTACTGCGCCACCCTCAACAACCTGGCAGCAGTGC 1644582 Query 173022 GAGATGCTCCCAATTTCAAGT 173042 | |||| ||||| ||||||| Sbjct 1644583 GCAATGCACCCAACTTCAAGT 1644603 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 173740 CGACAAAAAGCTTCTCGACCTCGGCTGGCAGGAGAAAACCACATGGGAGGATGGCCTTAA 173799 |||||| ||||| || || || |||||||||||||| ||||| |||||||| ||||| || Sbjct 1646253 CGACAAGAAGCTGCTGGAGCTGGGCTGGCAGGAGAACACCACCTGGGAGGAGGGCCTGAA 1646312 Query 173800 GCAGACTGTGGGTTGGTACCTTCAGCATGCCACACG 173835 | |||| | | |||||||| |||| ||||| || Sbjct 1646313 GAAGACCATTGACTGGTACCTCAAGCACGCCACCCG 1646348 >seq366 Length=3905163 Score = 165 bits (182), Expect = 2e-35 Identities = 125/146 (86%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 224954 GACTCCAGGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCC 225013 ||||| |||||| ||| | ||| || ||||||||||||||||||||||||||||||||| Sbjct 3020581 GACTCGCGGTCCTCGCCGGTGGCGTAACGCCACTGGATGTACTGGTTGGGGGTCATGTCC 3020522 Query 225014 AGGTGGTTCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGA 225073 |||||||||||||| |||||||| || ||||| || ||||| |||| ||||| |||||| Sbjct 3020521 AGGTGGTTCTCAATGTGGTGGAAGGCGTGCTGAGCCACGTAGGCCACGCGCAGGTTGGGG 3020462 Query 225074 TGCTTCCACACAGAGCCCCGAGTCGG 225099 ||||||||||| || || || |||| Sbjct 3020461 TGCTTCCACAC-CAGGCCAGACTCGG 3020437 Score = 136 bits (150), Expect = 7e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 226366 CATGTTGTTGATAATCACACAGGTCTTGCGCTTCACCACGGTGGTGCGCTCCGCGAGACC 226425 ||||||| ||| || || |||| |||||| | ||||||||| || | || || Sbjct 3017193 CATGTTGCGGATGATGACGCAGGCCTTGCGGCGGATGGGGGTGGTGCGGTCGGTCAGGCC 3017134 Query 226426 GCGGCAGATGAGGGGCACGAGCACGGCAAGGGTCCGGGCATCCACGGTCTGGACAAAAGT 226485 |||| || |||||||| || | || ||||| || || ||||| | ||| || || || Sbjct 3017133 GCGGACGAGCAGGGGCACCAGGATGGACAGGGTGCGCGCGTCCACAGACTGCACGAACGT 3017074 Query 226486 GGTCGCGGACAGCTTGTGGACGCACTCGGGGACCTGGCTCGTGTCGGAAATAGACTCGAT 226545 |||||| ||||||||||||||||| ||||| |||| ||| | | || || | ||| Sbjct 3017073 GGTCGCCGACAGCTTGTGGACGCAGTCGGGCACCTCGCTGGGGGCGCCGATGCAGCGGAT 3017014 Query 226546 GAGGTGGGGCACAAAGGGGTCAATGTCCTTGTTGCCAATGGACTTGCAGCACATG 226600 ||||| ||||| ||||| |||||||| |||||| |||| ||||||| || Sbjct 3017013 CAGGTGCGGCACGAAGGGCTCAATGTCGCGGTTGCCGATGGCGGCGCAGCACTTG 3016959 Score = 136 bits (150), Expect = 7e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225282 CCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCAGGTCGTAGT 225341 |||| ||||| ||||||||||| | | |||||||||| ||||| ||||| ||||| Sbjct 3019838 CCTCGAGGAAGCCGGGCTCGGGCAGCACCCACTTGGTGGTGGCGTCGGCCAGGTTGTAGT 3019779 Query 225342 AAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGTGCTTCGTGA 225401 | | || |||||||| |||| |||| || |||||||| || |||| |||| | | Sbjct 3019778 AGGCAGCGGCCTCGGGGCGCTGCTCCACAAACTTGGACAGGTTGCCCAGGTACTTCTTCA 3019719 Query 225402 GCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGT 225461 |||||| ||| | |||||| || | || | |||||| ||||| ||||||||||||| Sbjct 3019718 GCTTGAAGTTGTCCTCGTAGTGGATGATGCTGGTGCACACGGCGTCCAGGAAGCCAGAGT 3019659 Query 225462 CGTGGGACAC 225471 |||| ||||| Sbjct 3019658 CGTGCGACAC 3019649 Score = 131 bits (144), Expect = 3e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225857 AGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATG 225916 ||||| |||||| ||||||||||| ||| |||||||| | | |||||||| | | Sbjct 3018372 AGGGTGGACTTGCCGGCGCCGTTGGGGCCGCACAGGCCGTAGCGCTGGCCGCGCTTCAGG 3018313 Query 225917 TTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCG 225976 | ||||| | | |||||| |||||||||||||| ||||| |||||||||||||| | | Sbjct 3018312 TGCAGGCGGGCGTTGTTCAGCAGGATCTTGCCACCGTAGGCCAGGGAGAACTCGCAGTTG 3018253 Query 225977 CACAGGTCCTCACCCTCCTC 225996 ||||||||||| |||||||| Sbjct 3018252 CACAGGTCCTCGCCCTCCTC 3018233 Score = 123 bits (136), Expect = 5e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 224462 ACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAGCGACTCGCGGTCA 224521 || || ||||||||| | || | ||| || | | ||||| || ||||||||||| Sbjct 3021589 ACCACGCCGCCGCCGTACTCCTTGATGGCCGAGGCCATGGCGCCCAGGGACTCGCGGTCC 3021530 Query 224522 AGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCACAGGGCTGCACCA 224581 ||| |||| || ||||| ||||| | | | |||||| |||||||| ||| ||||| Sbjct 3021529 AGGTAGTTGGTGGGCTCGTCCAGCACCAGGATGTGGGGCTGCTGCCACATGGCGGCACCC 3021470 Query 224582 ACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCG 224627 | |||||||||||||||||| || ||||| |||||||||||| ||| Sbjct 3021469 AGCACCAGCTTCACCTTCTGGCCACCAGACAGGCCGCGGATCTGCG 3021424 Score = 105 bits (116), Expect = 1e-17 Identities = 138/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 224734 GTCAATGTCGGCAAGCAGCTTCTGGAAACCGAATTCCTCGAGCTTCTCGCGGACCATCCA 224793 ||| ||||||| |||| ||||||||| || | ||||||||| |||||| || ||| Sbjct 3021002 GTCGATGTCGGTGAGCATCTTCTGGAAGCCCATCTCCTCGAGCCGGTCGCGGGTCAGCCA 3020943 Query 224794 GGAAGCAGACTCGTCGTTCTTCCAGAACACCTCATACTCGTAGGTGCGCTTGAACTTGCG 224853 ||| | | | ||| |||||| |||||| ||||||||| |||||| |||||| Sbjct 3020942 GGAGGTCTCCACCTCGCCCTTCCACTGCACCTCGTACTCGTAGCCGCGCTTCTGCTTGCG 3020883 Query 224854 GCGG-CCACCA--ATACGGTCCAGGCGCTTCTTGACGCCGTCCACTACCTTGATTTCGTA 224910 |||| ||| || | ||| ||||||| ||||||||||| ||||||| |||| Sbjct 3020882 GCGGCCCAGCAGCTTCTCCACCACGCGCTTC---ACGCCGTCCACCACCTTGACCTCGTT 3020826 Query 224911 CATCTTCT 224918 |||||||| Sbjct 3020825 CATCTTCT 3020818 >seq1136 Length=1242750 Score = 111 bits (122), Expect = 3e-19 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1180290 GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1180349 Query 84516 CCCACATCGGGCAGGTCG 84533 ||||| || || ||||| Sbjct 1180350 CCCAC-TCTGGGCGGTCG 1180366 >seq825 Length=862972 Score = 111 bits (122), Expect = 3e-19 Identities = 119/155 (77%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 224979 ACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAG 225038 |||||||| ||||||||| ||| |||||||||||||| | ||| | |||||||| | Sbjct 530024 ACCGCCACCAGATGTACTGCGAGGGCGTCATGTCCAGGTGCTGCTCCACGTGGTGGAAGG 530083 Query 225039 CATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC- 225097 | ||||| || ||||| || | |||| |||||| ||||||||||| | ||| ||| Sbjct 530084 CGTGCTGCGCCACGTAGGCGAGCCGCAGGTTGGGGTGCTTCCACAC-GCTGCCCTCGTCG 530142 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGT 225132 || | | |||||| || || | |||||||||||| Sbjct 530143 GGCAGCGTCTCGCCCGTCAGCATCTTGATGAGCGT 530177 >seq1168 Length=1683484 Score = 107 bits (118), Expect = 4e-18 Identities = 115/150 (77%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312 ||| |||||||||||||| ||||| ||||||||| || || ||||||||||| || Sbjct 215935 GTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 215876 Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCTCCACG 10370 || || |||||||| |||| |||||| || || ||||| ||||| ||||||||| Sbjct 215875 GCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCCGAGAA--GAAGATGCCCTCCACG 215818 Query 10371 CACACCCAGGCGACGAGGCGCTCTGCGAAG 10400 || | ||||||| || ||||| || ||| Sbjct 215817 CAGGCAAAGGCGACCAGCCGCTCAGCAAAG 215788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921606893703120