Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1168 149 1e-30 >seq1168 Length=1683484 Score = 149 bits (164), Expect = 1e-30 Identities = 133/164 (81%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| ||||||| |||||| || ||| ||||||||||||||||||||| | ||| |||| Sbjct 215795 GAGCGGCTGGTCGCCTTTGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCTTTCTGCTCC 215854 Query 42759 ATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||||||||||| || || || |||||||| ||||||||||| ||||| ||||| Sbjct 215855 ATCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCCGGCCTCACCTTCTCCAACGAGCTCAT 215913 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT 42861 | | |||||||| ||||| | |||||||| ||||| |||| Sbjct 215914 CTCGCGCGACGAGGGCCTGCACACCGACTTTGCGTGCCTGCTGT 215957 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 42502 AGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACG 42561 |||||||| |||||||||||||||||| ||||| |||||| | ||| ||| ||||| Sbjct 215436 AGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAGATGTACA 215495 Query 42562 CCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCA 42621 | ||||| | ||||||||| ||| | ||| || |||||||| | |||| Sbjct 215496 GCCTGCTGCTGGAGACGTACATCAAGGACAGCAAGGAGAAGGACCGGCTGTTCCACGCCA 215555 Query 42622 TGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATC 42674 | ||||| ||||| | ||||||||||| || ||||||||||| |||||| Sbjct 215556 TCCAGACGGTGCCCGTGGTGAAGAAGAAGGCAGAGTGGGCGCTCAAGTGGATC 215608 Score = 100 bits (110), Expect = 5e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 244105 CTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGT 244164 ||| |||||||||||||||||| ||||| |||| | || ||||||| || ||| | Sbjct 610270 CTCACCCGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTT 610329 Query 244165 GTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCT 244224 ||||||||| ||||| | ||| || ||||||||||| | ||||||||| ||| | Sbjct 610330 GTTGCCCAGGATCTGGGAGGTGGAGGCGGTCGGCATGGGGGCCACCAGCAGCGAGTTGCG 610389 Query 244225 CACGCCGTGC 244234 |||||| ||| Sbjct 610390 CACGCCATGC 610399 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 245187 CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGT 245246 ||||||||| |||||| | || || |||||||| ||| |||||||||||| ||||| Sbjct 613273 CGTTGAAGACGCGCAGCATGGGGACAATGCCGTTGGAGGTGCCGTTGGTGCCACGGATGT 613332 Query 245247 AGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGA 245306 ||| ||| || | | || |||| ||||| | ||| | |||||||| |||||||| Sbjct 613333 AGGAGCCGGTGGCGCGGATGTTGTGCATGGAGAGGCCGATGCCGCCGGCTGACTTGGAGA 613392 Query 245307 TGAGGGCGCAGCTCTTGATGGTGTC 245331 || |||||| ||||| |||||| Sbjct 613393 TGCAGGCGCACTCCTTGAGGGTGTC 613417 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 244494 CCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG-CATGGCTTCGGGCACG 244552 |||||||||| | ||||||||| | ||| ||| |||||||||| | | | || |||| Sbjct 611386 CCTGCACGCCCAGGCCGATGGGGCGGTGGCGCATGTTGGAGCGGCGCGCCGTCTC-CACG 611444 Query 244553 GGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCG 244612 ||||| ||||| |||| || | |||||| ||||||||||| | || | | || ||| Sbjct 611445 GGGTAGTAGTTGACGTCAATGATCTTGTTCAGGTTGCGGGTCACCACGGTGGTCACCTCG 611504 Query 244613 GCCAGCAGCTGAAAGTC 244629 |||||| | |||||| Sbjct 611505 GCCAGCTTGTCAAAGTC 611521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944323311492960