Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq366 143 6e-29 >seq366 Length=3905163 Score = 143 bits (158), Expect = 6e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 334725 TTCGCCATGTTCCGGATGATAACACACGTCTTACGCCGAACGGGGGTGGTGCGATCGGCA 334784 || |||||||| |||||||| || || | ||| || || | |||||||||||| |||| Sbjct 3017198 TTGGCCATGTTGCGGATGATGACGCAGGCCTTGCGGCGGATGGGGGTGGTGCGGTCGGTC 3017139 Query 334785 AGCCCGCGGACGAGTAGCGGGGTCAGGATAGACAGGGTCTTCGCGTCGACCGACTGGACG 334844 || ||||||||||| || || |||||| |||||||| |||||| || ||||| ||| Sbjct 3017138 AGGCCGCGGACGAGCAGGGGCACCAGGATGGACAGGGTGCGCGCGTCCACAGACTGCACG 3017079 Query 334845 AACGTGGTCGCAGATAGGTTGTGGACACACTCGGGGACGTC-CTGAGGAGAACCAATGCT 334903 ||||||||||| || || |||||||| || ||||| || || ||| || | || |||| Sbjct 3017078 AACGTGGTCGCCGACAGCTTGTGGACGCAGTCGGGCACCTCGCTG-GGGGCGCCGATGCA 3017020 Query 334904 CTTCACAAGATGGGGAATGAAGGGTTCGATGTC 334936 | || || || | |||||| || ||||| Sbjct 3017019 GCGGATCAGGTGCGGCACGAAGGGCTCAATGTC 3016987 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 333643 CCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGT 333702 |||||||||| ||||||||||| | | |||| |||| | | |||| ||| ||||| Sbjct 3019838 CCTCGAGGAAGCCGGGCTCGGGCAGCACCCACTTGGTGGTGGCGTCGGCCAGGTTGTAGT 3019779 Query 333703 AACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCA 333762 | || | ||||| |||| || ||| |||| |||||| || ||| ||||||||||| Sbjct 3019778 AGGCAGCGGCCTCGGGGCGCTGCTCCACAAACTTGGACAGGTTGCCCAGGTACTTCTTCA 3019719 Query 333763 GCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGT 333822 |||| | ||| ||||| ||||| || |||||| || ||||| ||||| || |||| Sbjct 3019718 GCTTGAAGTTGTCCTCGTAGTGGATGATGCTGGTGCACACGGCGTCCAGGAAGCCAGAGT 3019659 Query 333823 CGTGTGACACAATCACGC 333840 |||| ||||| | ||||| Sbjct 3019658 CGTGCGACACCACCACGC 3019641 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 333305 GTCAAGGGTCTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGT 333364 ||| |||| ||| ||| || |||| ||| |||||||| ||||| ||||||||||| || Sbjct 3020588 GTCCAGGGACTCGCGGTCCTCGCCGGTGGCGTAACGCCACTGGATGTACTGGTTGGGGGT 3020529 Query 333365 CATGTCAAGATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCAT 333424 |||||| || || | ||| ||||||||||| || ||||| |||||||| || | |||| Sbjct 3020528 CATGTCCAGGTGGTTCTCAATGTGGTGGAAGGCGTGCTGAGCCACGTAGGCCACGCGCAG 3020469 Query 333425 ATTTGGATGCTTCCAAAC 333442 || || |||||||| || Sbjct 3020468 GTTGGGGTGCTTCCACAC 3020451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102860980145100