Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1307 408 5e-109 >seq1307 Length=2189 Score = 408 bits (452), Expect = 5e-109 Identities = 509/694 (73%), Gaps = 10/694 (1%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| || || || ||||| ||||| | |||||||| || ||||| Sbjct 1501 AGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACTAGTTTTTCATGAGGCTGATCT 1560 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||| || || || || || || |||||||| || Sbjct 1561 TGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTTGTATAGAAAGTT 1620 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTC-TAAG 6441 || ||||| || || ||||| || | || ||||||||||| || ||||| || | |||| Sbjct 1621 TCAAACTCAGGGTCTTCCGCAGCGCGAATTTCTTGTGAAACGAAATCATACGCACGTAAG 1680 Query 6442 GTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 |||| || | ||| | | |||||| | |||||||||| | || |||||||| Sbjct 1681 TTTAA-AGCTAAACCTACTACACCAATTGCACTCATCCAAAGACCAGTTACTGGAACAAA 1739 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 ||||||||||| |||| |||||| || || || || | |||||| || || ||||| Sbjct 1740 TAGCATAAAGAAGTGTAACCAACGTTTGTTTGAAAAAGCTACACCAAAAATTTGTGACCA 1799 Query 6562 GAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTT 6621 |||||| || || || ||||| ||||| || || || ||||||| || | |||||| Sbjct 1800 GAAACGGTTTGCTGTAACCATTGAATAAGTTTCTTCAGCTTGTGTTGGGTTAAACGCACG 1859 Query 6622 GAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAAT 6681 ||| || |||| |||||||||||||| | || || || ||||| ||||||||||| Sbjct 1860 GAATGTGTTTGCACCATCACCATCTTCAAAAAGCGTGTTTTCAACAGTTGCACCGTGAAT 1919 Query 6682 AGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAG 6741 ||||| || |||||| | || | | ||| || |||||||||||||| || ||||| | Sbjct 1920 TGCACAAAGTAATGCTGCTCCAAGTACACCGGCAACACCCATCATATGGAAAGGGTTTAA 1979 Query 6742 CGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAA 6801 |||||||| ||||| || || | ||| | | ||| ||||| || || ||||| || || Sbjct 1980 AGTCCAGTTATGGAATCCTTGGAAGAATAAAATGAATCGGAAAATTGCAGCAACGCCGAA 2039 Query 6802 CGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAA 6861 || ||||||||||||| || || || | |||||| || | || ||||| || || Sbjct 2040 ACTTGGTGCAAAGAACCAACCAGATTGACCTAAAGGATAAATTAAGAATACAGAAACGAA 2099 Query 6862 GACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAA----TACCGACTAGAC 6917 |||| ||| ||| | || || || || || || || ||||||| |||||| || Sbjct 2100 TACAGAAATTGGAGCTGAGAATGCAATCGCGTTATATGGACGAATTTTTACCGA----AC 2155 Query 6918 GTGCGATCTCAAACTGCCGAAGCATGAAACCTAT 6951 | || || |||||||| |||||||| ||||| || Sbjct 2156 GCGCAATTTCAAACTGACGAAGCATAAAACCAAT 2189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622114332750240