Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq12 114 1e-20 seq1204 104 3e-17 seq514 93.3 5e-14 seq534 87.8 2e-12 seq557 82.4 9e-11 >seq12 Length=2794402 Score = 114 bits (126), Expect = 1e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 2342299 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCG 2342240 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| |||||||||||||| || | || ||||||| Sbjct 2342239 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 2342180 Query 46499 TCC 46501 ||| Sbjct 2342179 TCC 2342177 >seq1204 Length=1697657 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | |||| |||||| |||| || |||||| ||||| |||||||||| Sbjct 1370476 TGCCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 1370535 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || |||||||||||||| || || | ||||||||||||| | Sbjct 1370536 CCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCGGGGG 1370595 Query 46485 GCACGCTCTCCTTGTCC 46501 | | || |||||||||| Sbjct 1370596 GGATGCCCTCCTTGTCC 1370612 Score = 89.7 bits (98), Expect = 6e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | |||| |||||| |||| || |||||| ||||| |||||||||| Sbjct 1369838 TGCCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 1369897 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 || ||||| | || || |||||||||||||| || || | ||||||||||||| Sbjct 1369898 CCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCGG 1369954 >seq514 Length=2321867 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||||| || ||||| || Sbjct 1627195 CGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCG 1627136 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| ||||| |||| ||||||||||| Sbjct 1627135 TCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTC 1627095 >seq534 Length=2359 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||||||||| |||||||||| | ||||| |||| || |||||||||||||| || | Sbjct 1223 CCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 1164 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 | | ||||||||||| | || | || |||||||||| Sbjct 1163 TGAGCCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 1126 >seq557 Length=1392758 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||||| || ||||| |||| || |||||||||||||| || | Sbjct 493081 CCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAAGA 493022 Query 46464 TCAAGCGCTGCTGGTCGG 46481 | | |||||||||||||| Sbjct 493021 TGAGGCGCTGCTGGTCGG 493004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565228889863920