Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1168 132 5e-26 seq1204 122 9e-23 seq514 113 5e-20 seq12 113 5e-20 seq534 95.1 1e-14 seq557 82.4 8e-11 >seq1168 Length=1683484 Score = 132 bits (146), Expect = 5e-26 Identities = 129/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| ||||||||| |||| ||||||||| | || ||||| |||||| Sbjct 215960 TGTACAGCAGGCACGCAAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGG 215901 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | |||||||||||||||||| || |||||||| || |||| | |||| || Sbjct 215900 AGAAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGC 215841 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 |||| ||||||| |||||| ||| || || || ||||| ||||| Sbjct 215840 CCGAGAAGAAGATGCCCTCCACGCAGGCAAAGGCGACCAGCCGCTC 215795 >seq1204 Length=1697657 Score = 122 bits (134), Expect = 9e-23 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| ||||||| ||||||||||| | || ||||| |||||||| Sbjct 1370611 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAG 1370552 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | |||||||| ||||||||||||||| ||||| |||||||||| |||||||| Sbjct 1370551 GATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTG 1370492 Query 38457 CGTTTGAGAGGCGGC 38471 || || | || ||| Sbjct 1370491 CGCCTGCGTGGAGGC 1370477 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| ||||||| ||||||||||| | || ||||| |||||||| || | ||| Sbjct 1369964 GGCATCCCCCCCGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGC 1369905 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||||||||||||||| ||||| |||||||||| |||||||||| || | Sbjct 1369904 ACCCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGT 1369845 Query 38466 GGCGGC 38471 || ||| Sbjct 1369844 GGAGGC 1369839 >seq514 Length=2321867 Score = 113 bits (124), Expect = 5e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||||||||| |||||||| |||| ||| Sbjct 1627083 GGCATCCCCCCTGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGC 1627142 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||||||||||||||| ||||| |||| ||||| |||||||||| || | Sbjct 1627143 ACCCTGGCCGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCGC 1627202 Query 38466 GGCGGCC 38472 ||||||| Sbjct 1627203 GGCGGCC 1627209 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||| |||| || | ||||||||| |||||||| |||| ||| Sbjct 1626266 GGCATCCCCCCTGACCAGCAGAGGCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGC 1626325 Query 38406 ACCCTCAACGACTACAACATCCAAAAGG 38433 ||||| ||||||||||||||| |||| Sbjct 1626326 ACCCTGGCCGACTACAACATCCAGAAGG 1626353 >seq12 Length=2794402 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| ||||||| ||||| || || | ||| ||||| |||||||| Sbjct 2342178 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAG 2342237 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| |||||||| |||||||||||||| ||||| | || ||||| |||||||| Sbjct 2342238 GACGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 2342297 Query 38457 CGTTTGAGAGGCGGC 38471 || || | |||||| Sbjct 2342298 CGCCTGCGCGGCGGC 2342312 >seq534 Length=2359 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| | ||||| ||||||||||| | || ||||| |||||||| Sbjct 1127 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAG 1186 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 |||| |||||| | |||||||||||||||||||| Sbjct 1187 GACGGCCGCACCTTGGCCGACTACAACATCCAAAAGG 1223 >seq557 Length=1392758 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| ||||||| ||||| ||||| | || ||||| |||||||| |||| ||| Sbjct 492994 GGCATCCCCCCCGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGTCGC 493053 Query 38406 ACCCTCAACGACTACAACATCCAAAAGG 38433 ||||| ||||||||||||||| |||| Sbjct 493054 ACCCTGGCCGACTACAACATCCAGAAGG 493081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164384592640