Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_014564.2 Length=45413 Score E Sequences producing significant alignments: (Bits) Value seq1279 82.4 2e-11 >seq1279 Length=865741 Score = 82.4 bits (90), Expect = 2e-11 Identities = 138/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 1018 TGCAGCTGCGAGGACGCGATCGTGCCTCCGCGTTCGG--GAGCCGTCATTTCGACGGGCC 1075 ||||||||||| ||| | |||||| | || ||| | |||||| | |||||||| Sbjct 224304 TGCAGCTGCGAAGACACTGAGGTGCCTGCCCG--CGGCCGCGCCGTCGTGAAGACGGGCC 224247 Query 1076 TCTCGTTCGCTTTTCCGTCCGGCTACTACGGTCGGGTGGCCCCGCGCTCGGGTCTGGCCG 1135 | | | || | ||| ||||| |||| || ||||| ||||| ||||| ||||||| Sbjct 224246 TGCAGATTGCGTGCCCGCCCGGCACGTACGCGCGCGTGGCGCCGCGGTCGGGCCTGGCCG 224187 Query 1136 CGAAATTTTTGATAGACGTGGGGGCGGGCGTGGTGGATCCCGGTTACCGGGGGGAAGTGA 1195 || || || ||| ||| || ||||||||||| | ||||| || || ||| Sbjct 224186 TCAAGCACTTTATCGACACGGGCGCCGGCGTGGTGGACGAGGACTACCGCGGCGAGGTGG 224127 Query 1196 AGGTGGTGCTGTTTAACC 1213 ||||||||||| |||| Sbjct 224126 GCGTGGTGCTGTTCAACC 224109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145197679159500