Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1168 107 2e-18 seq1094 87.8 2e-12 >seq1168 Length=1683484 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| || ||||| || || || || || || || |||||| ||||| Sbjct 215946 GCAAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCG 215887 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 215886 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATG 215827 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 |||||||| || ||||| || | || ||||| || ||| Sbjct 215826 CCCTCCACGCAGGCAAAGGCGACCAGCCGCTCAGCAAAG 215788 >seq1094 Length=468076 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 117331 CCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAG 117390 || |||||||| |||||||| | ||| | || |||||||| || ||||||||| | Sbjct 337297 CCGGGCATGAGCTGGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGTGG 337356 Query 117391 ATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA 117450 || |||||||| ||||| |||| | || ||||| || ||| ||| | | ||| Sbjct 337357 ATGCCCTCCACGCACGCGTACGCCACCAGCCGCTCCGCAAAGCAGCTGC---TGCTCTCA 337413 Query 117451 AACCATTTCATTGCCCATTTCGCCTTCTTCTC 117482 | ||| ||||| ||||| |||||||||||| Sbjct 337414 ATCCACTTCATCGCCCAGGCCGCCTTCTTCTC 337445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589970873573040