Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq1307 446 2e-120 seq1039 95.1 1e-14 >seq1307 Length=2189 Score = 446 bits (494), Expect = 2e-120 Identities = 515/693 (74%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 181748 ATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCGTCTAATCGG----AATCCGACCCTA 181803 || ||||||||||| | || |||||| |||| ||| |||| ||| || || || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGT----TCGGTAAAAATTCGTCCATA 2134 Query 181804 CAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCC 181863 || |||||||| || || | ||| ||| |||||||||| |||||||| | || ||||| Sbjct 2133 TAACGCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCC 2074 Query 181864 TCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTT 181923 | | || ||||| ||||||||||||| || |||||||| || || || |||||||| || Sbjct 2073 TTTAGGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATT 2014 Query 181924 CCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGT 181983 | || | ||| |||| || || ||||| ||||| | || || ||||||||||||||||| Sbjct 2013 CATTTTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGT 1954 Query 181984 TGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATAC 182043 ||| ||| | || || | |||||||| | |||||||||||||| || || || || || Sbjct 1953 TGCCGGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACAC 1894 Query 182044 TCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGA 182103 || | | |||| ||||| ||||| || ||| || || | |||| |||| || Sbjct 1893 GCTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGA 1834 Query 182104 AGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTT 182163 |||||| ||||||||||||||||| ||||| |||||||| || || || ||| | || || Sbjct 1833 AGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTT 1774 Query 182164 TAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGAC 182223 | || || | ||||| || ||||||||||| |||||||| || | |||||||||| Sbjct 1773 TTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGAT 1714 Query 182224 AAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCA 182283 ||| | || ||| | | ||| | ||| | ||| | ||||| ||||| || || || || Sbjct 1713 GAGTGCAATTGGTGTAGTAGGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACA 1654 Query 182284 AGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTT 182343 |||||| | || | |||||||| ||||| || || ||||| ||||| || ||||| || Sbjct 1653 AGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTTT 1594 Query 182344 GAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTT 182403 || |||||| | ||||| ||| | || | ||||| || ||||| || | || || Sbjct 1593 AAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTATT 1534 Query 182404 CCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 ||||||||| || ||||| | || ||||| || Sbjct 1533 CCCTGAGGAGGTTTTACCACGTGGAAACGCTCT 1501 >seq1039 Length=107091 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 141252 CATTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAA 141311 || |||||||||||||||||| ||||| | || ||||||| || ||||||||||||||| Sbjct 15795 CAATCCTCAGTAGCTCAGCGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCAA 15854 Query 141312 ATCCTACCTGGGGAG 141326 |||||||||||||| Sbjct 15855 GTCCTACCTGGGGAG 15869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610386530073840