Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1307 302 5e-77 >seq1307 Length=2189 Score = 302 bits (334), Expect = 5e-77 Identities = 494/714 (69%), Gaps = 21/714 (3%) Strand=Plus/Minus Query 170853 ATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAAC 170912 || ||||| ||||| | || ||||| || || | ||| || | || || ||| Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGTTCGGTAAAAATTCGTCCATATAAC 2130 Query 170913 GCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCTGATCTATCCACTA 170972 || | |||||||| ||| || | || ||| | | || | || ||||| || Sbjct 2129 GCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCCTTTA 2070 Query 170973 GGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAATTTTTCGTTATATC 171032 ||||| |||||||||| |||||| ||||| || || |||||||| || | || Sbjct 2069 GGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATTCATT 2010 Query 171033 TTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCA 171092 |||||| | ||||| ||||| ||| || || || || || || |||||||||||||| Sbjct 2009 TTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGTTGCC 1950 Query 171093 GGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTG 171152 || |||| || | ||||||| | ||||| ||||| |||||||| || | ||||| | Sbjct 1949 GGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACACGCTT 1890 Query 171153 TATGAAGACACATCAGTTTATACTGATAATAAAATTCAAAGCACAACATTCCGTGCCTTT 171212 | |||||| | | || || |||| ||||||||||| ||| Sbjct 1889 TTTGAAGAT------GGTGATGGTG-----------CAAAC----ACATTCCGTGCGTTT 1851 Query 171213 GATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAACAGATTCTGGTCACAG 171272 | || ||||| | ||||||||||| ||| ||||||||||| | ||||||||||| Sbjct 1850 AACCCAACACAAGCTGAAGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAA 1791 Query 171273 ATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTTATGTTGTTCGTTCCT 171332 || |||||| | ||||| || |||||| | | ||||||||| ||||| | || ||||| Sbjct 1790 ATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCA 1731 Query 171333 GTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTCAGAGCA 171392 || | ||| | |||| | || ||| | |||||| |||| | ||| | | || Sbjct 1730 GTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTAGGTTTAGCTTTAAACTTACGTGCG 1671 Query 171393 TACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTAC 171452 || ||||| || || ||||| || | || || |||||||| ||||| || |||||||| Sbjct 1670 TATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTAT 1611 Query 171453 ACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCAGTTGACCAACCA 171512 || || ||||| ||| | || |||||||| | || |||||| | | || || || Sbjct 1610 ACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCT 1551 Query 171513 CATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 ||||| || | |||||||| || || || |||||| | || ||||| |||||| Sbjct 1550 CATGAAAAACTAGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAA 1497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579203054744640