Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq1307 333 3e-86 >seq1307 Length=2189 Score = 333 bits (368), Expect = 3e-86 Identities = 487/689 (71%), Gaps = 0/689 (0%) Strand=Plus/Minus Query 169631 ATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCGTCCTTATAAT 169690 |||||||| |||||| | ||||||||| | || ||| | || ||||| ||||| Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGTTCGGTAAAAATTCGTCCATATAAC 2130 Query 169691 GCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCACTT 169750 || ||||||||||| | ||| ||| ||||||| || ||| || | || || || | Sbjct 2129 GCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCCTTTA 2070 Query 169751 GGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTG 169810 || || || ||||||||||| || || || || | ||||| ||| | ||| | Sbjct 2069 GGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATTCATT 2010 Query 169811 TTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCA 169870 || ||| | ||||||||||| |||||||| || || || ||||| ||||||||||| || Sbjct 2009 TTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGTTGCC 1950 Query 169871 GGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTG 169930 || | | || | |||||| |||| ||| || || |||| || || || ||||| | Sbjct 1949 GGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACACGCTT 1890 Query 169931 TATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAG 169990 | |||||| ||||| ||||| || ||| |||||| | | ||||| | ||||| Sbjct 1889 TTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAA 1830 Query 169991 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCT 170050 |||||||| ||||| || |||||||| |||||||| || || || ||| | || ||||| Sbjct 1829 ACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCA 1770 Query 170051 AACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCC 170110 ||||| |||||| | || || || ||| | ||||| || || | |||||||||| Sbjct 1769 AACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGATGAGT 1710 Query 170111 TCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAG 170170 | ||||| | | || | ||| | || | ||||| || |||||||| || || Sbjct 1709 GCAATTGGTGTAGTAGGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAA 1650 Query 170171 ATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAAT 170230 || | || || ||||| || || ||||| || ||||| || ||||| || || || || Sbjct 1649 ATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTTTAAAC 1590 Query 170231 GAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCA 170290 ||||| ||||||| ||| |||| || ||||| || |||||||| | | ||||| Sbjct 1589 GAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTATTCCCT 1530 Query 170291 GAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 || || ||| | || | || ||||| || Sbjct 1529 GAGGAGGTTTTACCACGTGGAAACGCTCT 1501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574463934481680