Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq1307 450 2e-121 >seq1307 Length=2189 Score = 450 bits (498), Expect = 2e-121 Identities = 516/693 (74%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 165518 ATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACGTCTCATCGGTA----TCCGTCCCTA 165573 |||||||| |||||||||||||||||| | || ||| |||||| | ||||| || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGT----TCGGTAAAAATTCGTCCATA 2134 Query 165574 CAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCC 165633 || || ||||| ||||| | ||| || |||| || ||| || || | || || || Sbjct 2133 TAACGCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCC 2074 Query 165634 TCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTT 165693 | | |||||||| ||||||| || || ||| |||||| || || ||||| ||| | || Sbjct 2073 TTTAGGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATT 2014 Query 165694 CCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGT 165753 | || | ||| | |||||||||||||||||||| || || || || |||||||||||||| Sbjct 2013 CATTTTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGT 1954 Query 165754 TGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATAC 165813 ||| ||| | || || | ||||| |||| ||| || || |||| || || || || || Sbjct 1953 TGCCGGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACAC 1894 Query 165814 TCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGA 165873 || | | |||||||||| | |||||| || ||| || ||| || | || |||| || Sbjct 1893 GCTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGA 1834 Query 165874 AGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTT 165933 |||||| || ||||||||||| ||||||||||||||||| || || || ||| | || || Sbjct 1833 AGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTT 1774 Query 165934 TAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGAC 165993 | || || | ||||| || ||||||||||| |||||||| || | |||||||||| Sbjct 1773 TTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGAT 1714 Query 165994 AAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCA 166053 ||| | || ||| | | ||| | ||| | ||| | ||||| ||||| || || || || Sbjct 1713 GAGTGCAATTGGTGTAGTAGGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACA 1654 Query 166054 AGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTT 166113 ||| || | || || |||||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 1653 AGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTTT 1594 Query 166114 GAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTT 166173 || |||||| ||||||||||| |||| | ||||| || ||||| || | || || Sbjct 1593 AAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTATT 1534 Query 166174 CCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 |||||| || ||| | || | || ||||| || Sbjct 1533 CCCTGAGGAGGTTTTACCACGTGGAAACGCTCT 1501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556915429740240